EST details — SGN-E397904

Search information 
Request: 397904Match: SGN-E397904
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C180836Clone name: TUS-35-G10
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C180836 is on microarray TOM1 spot ID 1-1-7.3.17.15 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C63944 [cLEM-4-F17] Trace: SGN-T84217 EST: SGN-E268799 Direction: 5' Facility: TIGR
Clone: SGN-C180836 [TUS-35-G10] Trace: SGN-T193625 EST: SGN-E392299 Direction: 5' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E397904Length: 546 bp (883 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E397904 [] (trimmed) AAACAAATAATAGGGATTTTTATTTATCTATACATAACAAAAATTACACATTTCCCAGTCTTACAATATCTCATACCTTTCACAACATAACAAAA
ATTTCACCAAGAAAAGTTTACATCACTCAAATTCTCAGGACTGACGTTTTAACACTTGAAGAAGAGGAGAACTGGAAACCAACCAAAACAGGAAT
ACGTGACATCATGAAGAAACTGAATACATAAACTTATATTTTTCCTAGTGCTAACAAATATATCTCACATCACGATTTCAGGTTTCAATATGCTG
GATTTGATCTCCTTGTGGGGCAAAACTACACCACCATTGCTGTAAATTTCATCACAAACATGAACATCTTCTCCGAGAATGGTCATGTTCTCAAC
ACGAGCCCATTGTCCAACAGTAGAGTGCCAACCAATGATGCTACCTGAGATGCATGCATGTTTCTTGATGCGGACGCGGGCGGGGGGAGTGCAAC
GGGAGAGTCTAACTCCAGACTCAATCACACAACACGAACCTATTGCAACTCCTGGTCCTATCAAAACAACC
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E397904] SGN-U568547 Tomato 200607 Build 2 79 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T199230 [Download][View] Facility Assigned ID: FA0AAD23BD05FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.947 Expected Error Rate: 0.0052 Quality Trim Threshold: 14.5