EST details — SGN-E398389

Search information 
Request: 398389Match: SGN-E398389
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C180859Clone name: TUS-35-H9
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C180859 is on microarray TOM1 spot ID 1-1-8.4.17.15 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C65868 [cLEN-11-N4] Trace: SGN-T89685 EST: SGN-E274658 Direction: 5' Facility: TIGR
Clone: SGN-C180859 [TUS-35-H9] Trace: SGN-T197706 EST: SGN-E396380 Direction: 3' Facility: INRA
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Sequence 
Sequence Id: SGN-E398389Length: 574 bp (849 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E398389 [] (trimmed) GAATCAGAGAACATTCCGTCCCAAAAAGAGTGCACCCTCAGGGAGTAAGGGTGCACAATTAAGACAGCACATTGATTCTACTTTAGGCAGCGGAA
ACTTGAGAGAGGCTGTAAGGCTTCCTCCTGGGGAAGATATTAATGAATGGCTAGCTGTCAACACTGTAGATTTCTTCAACCAGGTGAATCTGCTT
TATGGCACCCTCACTGAGTTCTGTACACCAGAAAACTGCCCAACAATGACTGCAGGCCCCAAGTATGAGTATAGGTGGGCTGATGGTGTACAAAT
CAAGAAGCCTATTGAAGTTTCTGCTCCGAAATATGTTGAATATTTGATGGACTGGATTGAAACTCAATTGGATGATGAATCTTTATTTCCTCAAA
GGCTTGGTGCACCTTTTCCACCTAACTTCAAGGATGTTGTCAAGACGATATTCAAACGTCTCTTTCGTGTATATGCACATATCTATCACTCCCAT
TTTCAGAAGATCGTGAGTCTTAAGGAGGAAGCACATTTGAATACGTGCTTCAAGCATTTCATTCTCTTCACCCATGAATTTGGGTTGATTGACAA
AAAG
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E398389] SGN-U580589 Tomato 200607 Build 2 25 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T199715 [Download][View] Facility Assigned ID: FA0AAD23CD05RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.976 Expected Error Rate: 0.0022 Quality Trim Threshold: 14.5