EST details — SGN-E398546

Search information 
Request: 398546Match: SGN-E398546
Request From: web userMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C174376Clone name: TUS-18-J6
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C174376 is on microarray TOM1 spot ID 1-1-3.2.16.15 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C22968 [cLED-4-C14] Trace: SGN-T49431 EST: SGN-E231662 Direction: 5' Facility: TIGR
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Sequence 
Sequence Id: SGN-E398546Length: 612 bp (880 bp untrimmed)
Status: Current VersionDirection: 5'
>SGN-E398546 [] (trimmed) CAGAATCTATGCAGAAATCCATGTCTCAGAGGTGTCGGGGTGCACAACATTGGGACAACTGCTACAAACTACGAAAAGGCAACTCGAGGATCGAA
TGCTGATGGTCTCACTTTGACTGACCTTATCCATTTGGATACCTAACTTCATACTGCTCTACTACCTCTCATAGCTAAAAATACGCATTTGATGC
TTGACTCTGCTAAGGTTCTTCATGAGAAGGAAAAGCTGCTGCTATAGGAAAAGAAACTTCTGGAGGACAATATATCTAGTATCATGAAAAACACA
ATAGTGAATGAAATGTCTGACCTTCCAGCACCCCACATGATTTGTGGACAACAAAAAGTTACCCTGAATTTCTTCTAGTGATTATCGTCGTATTC
GTCGAAAAGCCTTGCTTCTGCACCAGAGGAACCTGCAAAATTAGTTTCAATAAAACTAATAATTATTCATCCTTGTTCTTGTTTCTAATGGATGA
TGATTAAAGTTAACTTCTCTACTTTGACATATTTACTAGAGGGTGACTTATATGCCTATTTTTCCCTCTTTTTAAGTTGTATAATGGAGTACTTG
AAATTGATTACCCTACACATTATTGTTATGATTTTTTTGTGA
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E398546] SGN-U591636 Tomato 200607 Build 2 1 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T199872 [Download][View] Facility Assigned ID: FA0AAD6DE03RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.959 Expected Error Rate: 0.0228 Quality Trim Threshold: 14.5