EST details — SGN-E398620
Search information |
Request: 398620 | Match: SGN-E398620 |
Request From: web user | Match Type: EST sequence internal identifier |
Clone information |
SGN ID: SGN-C183842 | Clone name: TUS-43-D16 |
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Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C183842 is on microarray TOM1 spot ID 1-1-1.4.19.20 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing |
Clone: SGN-C7084 [cLEC-37-L9] | Trace: SGN-T31409 | EST: SGN-E208418 | Direction: 5' | Facility: TIGR |
Clone: SGN-C183842 [TUS-43-D16] | Trace: SGN-T197943 | EST: SGN-E396617 | Direction: 5' | Facility: INRA |
Sequence |
Sequence Id: SGN-E398620 | Length: 305 bp (940 bp untrimmed) |
Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E398620 [] (trimmed)
AATGACTTGATTTTTGTACTTGATTAAAAACTTTTAAGAATGTACAATAGCATGTTCTATCGTCCTTGAGACAACGATGCACTAAACTCATTGAC
AGAACATCTTTCGTTATCTTTTGCTGATCCATCAAGATCCAAGTATGTTTCAAACTTAAATGTGGGTTGTTTAGGACTTGAGCATTTCATTTCAC
TGTTGAGCATGAGAATTATGTCAGCCATAGTAGGACGGTCCCTAGGATGCTCTTGAACACAAAGAAGGCCAACGTGTACGCATCGCGGTATCTCT
TCTGGAAAAAATGAATTGAT
AGAACATCTTTCGTTATCTTTTGCTGATCCATCAAGATCCAAGTATGTTTCAAACTTAAATGTGGGTTGTTTAGGACTTGAGCATTTCATTTCAC
TGTTGAGCATGAGAATTATGTCAGCCATAGTAGGACGGTCCCTAGGATGCTCTTGAACACAAAGAAGGCCAACGTGTACGCATCGCGGTATCTCT
TCTGGAAAAAATGAATTGAT
Unigenes |
Current Unigene builds | |||||
[SGN-E398620] | SGN-U604064 | Tomato 200607 | Build 2 | 1 ESTs assembled | |
Follow SGN-U# link for detailed information and annotations |
Chromatogram |
SGN-ID: SGN-T199946 [Download][View] | Facility Assigned ID: FA0AAD31DB08FM1 |
Submitter: Koni | Sequencing Facility: INRA |
Quality processing |
Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
Sequence Entropy: 0.942 | Expected Error Rate: 0.0040 | Quality Trim Threshold: 14.5 |