EST details — SGN-E398654

Search information 
Request: 398654Match: SGN-E398654
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C184373Clone name: TUS-44-J19
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C184373 is on microarray TOM1 spot ID 1-1-6.2.16.11 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C69397 [cLER-10-B20] Trace: SGN-T94025 EST: SGN-E278598 Direction: 5' Facility: TIGR
Clone: SGN-C184373 [TUS-44-J19] Trace: SGN-T198303 EST: SGN-E396977 Direction: 3' Facility: INRA
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Sequence 
Sequence Id: SGN-E398654Length: 586 bp (863 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E398654 [] (trimmed) CCATTCGAGTACGAAGGGCATGAATTCATCTGGCAAGATGTTTGGCCTATGGGATGTCAGTACAATGGCCTACACCTGTGTTGTTGTAACTGTCA
ATTTACGTCTCCTTATGATGTGCAACACAATTACAAGATGGCATCACATTAGCGTTGGAGGGAGCATATTATTATGGTTCATTTTTGTATTTATC
TACTCGGGTATCCACTTGCACAAAGAACAGGAGGGTATCTATTTAGTCATCATTGTTCTGATAAGCACATTATACTTCTACCTTGCGCTGCTTCT
CGTACCAGTTGCTGCACTTTTTGTTGACTTCCTATATCAGGGGGTACAAAGATGGTTTTCCCCATATGATTACCAGATTGTTCAGGAAATTCACA
AGCACGAAATCGACAACAGCAGGATTGGTTTATTAGAGATCCGTAACGAGCTTTCTCCAGATGAAGAAAGGAGATACGCCATAATGCAACTTCCT
GGACAGAGATCAAAACATACTGGTTTTGCTTTTGATTCACCCGGTTATGAGTCATTTTTCGCATCTCAGGCTGGCGTGTTGGCACCTCAAAAGGC
GTGGGACGTTGCTCGG
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E398654] SGN-U565325 Tomato 200607 Build 2 11 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T199980 [Download][View] Facility Assigned ID: FA0AAD32CE10RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.981 Expected Error Rate: 0.0008 Quality Trim Threshold: 14.5