EST details — SGN-E398795
Search information |
Request: 398795 | Match: SGN-E398795 |
Request From: SGN database generated link | Match Type: EST sequence internal identifier |
Clone information |
SGN ID: SGN-C183110 | Clone name: TUS-41-F4 |
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Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C183110 is on microarray TOM1 spot ID 1-1-5.2.3.5 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing |
Clone: SGN-C37392 [cLEG-41-O5] | Trace: SGN-T72076 | EST: SGN-E259044 | Direction: 5' | Facility: TIGR |
Clone: SGN-C183110 [TUS-41-F4] | Trace: SGN-T199498 | EST: SGN-E398172 | Direction: 3' | Facility: INRA |
Sequence |
Sequence Id: SGN-E398795 | Length: 507 bp (900 bp untrimmed) |
Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E398795 [] (trimmed)
GTGGAGAAGCCTAAAGAACCTGAGAAACCCAAAGTGGTGGTTGTAGAGAAGCCTAAAGAATCAGAGAAACCTAAAGTAGTATAGAAGCCTAAAGA
ACCCGAAAAACCTAAAATAGTGGCGGTGGAGAAGCCTAAAGAAGCTGAAAAGCCCAAAGAACCCGTGAAGCCCAAGGAACCAGAGAAGCCTAAAG
AGCCCGAAAAGCCAAAGGAGGTTCAGAAGCCCAAAGAGCCCGAAAAGCCAAAAGAAGCACCTAAACCAGCACCACCAGTAGCTCTTCCCCCACAA
CCACAACCACAACCACAACCACAATTTCCGCCAGTTCCAGAACCAGTGATCGTGATGCCAGTTCAAGGATATCCACACCAACCCTCTCCGGGGAT
GTATTGTTGTGGGCAATGTTACGAAGGCTATACTGGAGGCCCTTGTTATCATGATAATTGGTACGGAAGACCAGTACAACCACCTCCACCACCAC
CATGCTACGACACATATTCATACGGATATGGG
ACCCGAAAAACCTAAAATAGTGGCGGTGGAGAAGCCTAAAGAAGCTGAAAAGCCCAAAGAACCCGTGAAGCCCAAGGAACCAGAGAAGCCTAAAG
AGCCCGAAAAGCCAAAGGAGGTTCAGAAGCCCAAAGAGCCCGAAAAGCCAAAAGAAGCACCTAAACCAGCACCACCAGTAGCTCTTCCCCCACAA
CCACAACCACAACCACAACCACAATTTCCGCCAGTTCCAGAACCAGTGATCGTGATGCCAGTTCAAGGATATCCACACCAACCCTCTCCGGGGAT
GTATTGTTGTGGGCAATGTTACGAAGGCTATACTGGAGGCCCTTGTTATCATGATAATTGGTACGGAAGACCAGTACAACCACCTCCACCACCAC
CATGCTACGACACATATTCATACGGATATGGG
Unigenes |
Current Unigene builds | |||||
[SGN-E398795] | SGN-U578859 | Tomato 200607 | Build 2 | 25 ESTs assembled | |
Follow SGN-U# link for detailed information and annotations |
Chromatogram |
SGN-ID: SGN-T200121 [Download][View] | Facility Assigned ID: FA0AAD29DC02RM1 |
Submitter: Koni | Sequencing Facility: INRA |
Quality processing |
Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
Sequence Entropy: 0.942 | Expected Error Rate: 0.0030 | Quality Trim Threshold: 14.5 |