EST details — SGN-E398864

Search information 
Request: 398864Match: SGN-E398864
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C183177Clone name: TUS-41-H23
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C183177 is on microarray TOM1 spot ID 1-1-2.4.3.13 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C183177 [TUS-41-H23] Trace: SGN-T195181 EST: SGN-E393855 Direction: 3' Facility: INRA
Clone: SGN-C183177 [TUS-41-H23] Trace: SGN-T195341 EST: SGN-E394015 Direction: 3' Facility: INRA
Clone: SGN-C183177 [TUS-41-H23] Trace: SGN-T195341 EST: SGN-E398863 Direction: 3' Facility: INRA
Clone: SGN-C183177 [TUS-41-H23] Trace: SGN-T195342 EST: SGN-E394016 Direction: 5' Facility: INRA
Clone: SGN-C183177 [TUS-41-H23] Trace: SGN-T195343 EST: SGN-E394017 Direction: 5' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E398864Length: 563 bp (831 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E398864 [] (trimmed) TTTGAAGACAGGAATGGTGATCTGACATCCAATTTCTACAAGAAATCTTGATTTTGGAGTCATCAATCCAGCTTATGTTGGAAAAAAGAACAAGT
ACGTATATGCAGCCATTGGGGGTCCTATGCCAAAAGTAATAGGGATAGCAAAATTAGACGTATCCGTAGCAGAAATTGATCGTCGCGATTGCATC
GTGGCATGTCGTATATTTGGAAAAGATTGCTATGGTGGTGAACCATTTTTCGTGCCTAAAAATCCTTCGATTGATGAAGACGATGGCTACGTGGT
GTCATACGTACACAATGAGAACACAGGGGAATCAAATTTTTTGGTCATGGATGCAACATCACCTAATCTTGACATTGTGGCTAATGTCAAATTGC
CTCGTCGTGTGCCTTACGGTTTCCATGGACTTTTCGTGAGTGAAAATGATCTTATGAAGCTATAAATATCGATATATTGATTAAATTATTTAAGA
TCTATGTATAATATGTATGTATATAAATGATATATAGGTTGATTCCTCTTTAAAATAATATTGTATCACTTAGGGACAATTAAATTTG
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E398864] SGN-U570287 Tomato 200607 Build 2 33 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T195342 [Download][View] Facility Assigned ID: FA0AAD29CD12RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.949 Expected Error Rate: 0.0094 Quality Trim Threshold: 14.5