EST details — SGN-E398937
| Search information |
| Request: 398937 | Match: SGN-E398937 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C172779 | Clone name: TUS-14-G17 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C172779 is on microarray TOM1 spot ID 1-1-8.3.20.10 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C10934 [cLEC-6-K8] | Trace: SGN-T24138 | EST: SGN-E202477 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C172779 [TUS-14-G17] | Trace: SGN-T195120 | EST: SGN-E393794 | Direction: 3' | Facility: INRA |
| Clone: SGN-C172779 [TUS-14-G17] | Trace: SGN-T195308 | EST: SGN-E393982 | Direction: 5' | Facility: INRA |
| Clone: SGN-C172779 [TUS-14-G17] | Trace: SGN-T195576 | EST: SGN-E394250 | Direction: 3' | Facility: INRA |
| Clone: SGN-C172779 [TUS-14-G17] | Trace: SGN-T195577 | EST: SGN-E394251 | Direction: 5' | Facility: INRA |
| Clone: SGN-C172779 [TUS-14-G17] | Trace: SGN-T195577 | EST: SGN-E398938 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E398937 | Length: 632 bp (829 bp untrimmed) |
| Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E398937 [] (trimmed)
ATGAATTTAACGAAGTGGACTCGAAATAATATTTACACAAGGAGCAAAATTACCAAAGTAGTTACAAAACAAAGCTATATACACAATAACTGCTG
TACTTATTCTGTGTTTCTTTTTTCCTCTCTCTCACTCACATTTTGACACAGAAGGAGCAGAAATTACCATAGTAGTTACAAAGTAAAGTTATATA
CACAATAACTACTACACTTATTCTTTTTCCCTCTCTCTCACTCATATATACACCCACACACGTACAAACAACAACCCTCTATTGATAAATAAGAT
GTGCAAAATCATAGGATTGTGCAGCCACTCTTATTCTCATTTAAGAAACTGTAATAGGTGTGAGGTATTGCCAAGGATGGTGCTGCTTGATGGTA
TTCATCTATCATTGTTGAGAATGGCAGAGGTGCCTGATAATAATTGTTGGGCATTGCCAAGGATGATGGCACCTGATAATAGTCATCTGGCAAAG
GGGGGGGTGAGGGAATATTATCATTACTCCATATTGTTCCCGCTGATGGAGAAATGCCATTTGGATAACAAGAACCATAACCAGTATTACCATAT
TGCCCATAGTAATTATAGCATGAATTTCTGCTATGTGCACAACAAGGAACAGAGTTGGGATT
TACTTATTCTGTGTTTCTTTTTTCCTCTCTCTCACTCACATTTTGACACAGAAGGAGCAGAAATTACCATAGTAGTTACAAAGTAAAGTTATATA
CACAATAACTACTACACTTATTCTTTTTCCCTCTCTCTCACTCATATATACACCCACACACGTACAAACAACAACCCTCTATTGATAAATAAGAT
GTGCAAAATCATAGGATTGTGCAGCCACTCTTATTCTCATTTAAGAAACTGTAATAGGTGTGAGGTATTGCCAAGGATGGTGCTGCTTGATGGTA
TTCATCTATCATTGTTGAGAATGGCAGAGGTGCCTGATAATAATTGTTGGGCATTGCCAAGGATGATGGCACCTGATAATAGTCATCTGGCAAAG
GGGGGGGTGAGGGAATATTATCATTACTCCATATTGTTCCCGCTGATGGAGAAATGCCATTTGGATAACAAGAACCATAACCAGTATTACCATAT
TGCCCATAGTAATTATAGCATGAATTTCTGCTATGTGCACAACAAGGAACAGAGTTGGGATT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E398937] | SGN-U570454 | Tomato 200607 | Build 2 | 12 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T195576 [Download][View] | Facility Assigned ID: FA0AAD2AD09FM1 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.963 | Expected Error Rate: 0.0038 | Quality Trim Threshold: 14.5 |
Working
