EST details — SGN-E399024

Search information 
Request: 399024Match: SGN-E399024
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C172670Clone name: TUS-14-C4
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C172670 is on microarray TOM1 spot ID 1-1-5.3.20.1 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C10779 [cLEC-6-E11] Trace: SGN-T24076 EST: SGN-E202415 Direction: 5' Facility: TIGR
Clone: SGN-C172670 [TUS-14-C4] Trace: SGN-T195209 EST: SGN-E393883 Direction: 3' Facility: INRA
Clone: SGN-C172670 [TUS-14-C4] Trace: SGN-T195651 EST: SGN-E394325 Direction: 3' Facility: INRA
Clone: SGN-C172670 [TUS-14-C4] Trace: SGN-T195651 EST: SGN-E399536 Direction: 3' Facility: INRA
Clone: SGN-C172670 [TUS-14-C4] Trace: SGN-T195652 EST: SGN-E394326 Direction: 5' Facility: INRA
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Sequence 
Sequence Id: SGN-E399024Length: 520 bp (885 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E399024 [] (trimmed) GTAATTAGGGAATGAAAATCCTACATATGACAAGTAAGAAGAATCATTGGAAGGAATGAACAATATATGTCACATCCTAATTCTATTCTGTGATA
AGGTTCCCTGGTTCATAAACTCTAAGCTGACTGGTCATATCTCTCTACCAAGAGAAAATAGGGAAAATACCATACTCTTAAGATTCTATAAACCC
TTGATTGGTACATATACTTTTTAAGTTTGTAACTCTACCTGCTTTCTTAACCTAGTGATGGAGTTACCTAATGTGTTGAACCCCTGAAGGATCAA
GGACCATAAATAGTTGGAACAAGTCATCATTGCCTTTTAAAAGCAAATATTTCAACTATTTATTTATTAGGACAAAATCAATTGAAAAAAAGAAA
CTTAAGAGTTCCATTATTTATGGTCAAATAGAAAAAGATAAAACCAAAATAACGGAGTTGCAATTGTGTACTCCTTGTTGTTATATCTTTAAGAT
GCAATGACTTTTTTTATGCCCACTCTGTTTTTAAAAATTCCTTGG
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E399024] SGN-U575636 Tomato 200607 Build 2 5 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T200205 [Download][View] Facility Assigned ID: FA0AAD2BB02RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.929 Expected Error Rate: 0.0041 Quality Trim Threshold: 14.5