EST details — SGN-E399048
| Search information |
| Request: 399048 | Match: SGN-E399048 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C172734 | Clone name: TUS-14-E20 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C172734 is on microarray TOM1 spot ID 1-1-5.1.20.10 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C172734 [TUS-14-E20] | Trace: SGN-T195227 | EST: SGN-E393901 | Direction: 3' | Facility: INRA |
| Clone: SGN-C172734 [TUS-14-E20] | Trace: SGN-T195375 | EST: SGN-E394049 | Direction: 5' | Facility: INRA |
| Clone: SGN-C172734 [TUS-14-E20] | Trace: SGN-T195667 | EST: SGN-E394341 | Direction: 3' | Facility: INRA |
| Clone: SGN-C172734 [TUS-14-E20] | Trace: SGN-T195667 | EST: SGN-E399540 | Direction: 3' | Facility: INRA |
| Clone: SGN-C172734 [TUS-14-E20] | Trace: SGN-T195668 | EST: SGN-E394342 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E399048 | Length: 676 bp (869 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E399048 [] (trimmed)
GCTTTCACCATGTTGAAAAGTGTTGTCGCATGGAGAAAAGAATTCAAGATTGATGAACTCTTGGATGAGAAAGAATTAGGACAAGGACTTGAAAA
AGTTGTTTACAATCACGGAGTAGACAAAGAAGGTCACCCTGTATGTTACAATGCATTTGGTGAGTTCCAAGACAAAGAATTGTACCAAAACACTT
TTGCTGATGACAAAGAGAAACTCACCAAATTCCTCAGATGGAGAATTCAATTCATGGAGAAATCCATCAGGAATCTTGATTTTAGCCCTGATGGT
ATCAACACTTTTGTTCAAGTTCTTGATCTGAAGAATTCACCTGGACTCTTCTTTTACAAGAAAGAACTTCGCCAAGCCACCAATCGTGCCCTTCT
ATTACTCCAGGATAATTACCCTGAATTTGTTGCCAAGCAGGTGTTCATCAATGTGCCGTGGTGGTACCCAGCTTACTACAGGATGATTAATGCAT
CTTTCACTACAAGGACCAAGAGCAAGTTTGTTTTTGCTGGTCCTTCAAGATCTGCTGATACTCTATTCAAATACATAGCACCTGAACAAGTACCA
GCACAATATGGTGGACTTAGCAAGGAGGGTGAAGAGGAATTCACCACTGCTGAACCACCCCCTGAAGAAATCATTAACCCAGCTTCTAACCCCAC
CATTTGAATTC
AGTTGTTTACAATCACGGAGTAGACAAAGAAGGTCACCCTGTATGTTACAATGCATTTGGTGAGTTCCAAGACAAAGAATTGTACCAAAACACTT
TTGCTGATGACAAAGAGAAACTCACCAAATTCCTCAGATGGAGAATTCAATTCATGGAGAAATCCATCAGGAATCTTGATTTTAGCCCTGATGGT
ATCAACACTTTTGTTCAAGTTCTTGATCTGAAGAATTCACCTGGACTCTTCTTTTACAAGAAAGAACTTCGCCAAGCCACCAATCGTGCCCTTCT
ATTACTCCAGGATAATTACCCTGAATTTGTTGCCAAGCAGGTGTTCATCAATGTGCCGTGGTGGTACCCAGCTTACTACAGGATGATTAATGCAT
CTTTCACTACAAGGACCAAGAGCAAGTTTGTTTTTGCTGGTCCTTCAAGATCTGCTGATACTCTATTCAAATACATAGCACCTGAACAAGTACCA
GCACAATATGGTGGACTTAGCAAGGAGGGTGAAGAGGAATTCACCACTGCTGAACCACCCCCTGAAGAAATCATTAACCCAGCTTCTAACCCCAC
CATTTGAATTC
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E399048] | SGN-U579616 | Tomato 200607 | Build 2 | 45 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T195668 [Download][View] | Facility Assigned ID: FA0AAD2BC10RM1 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.953 | Expected Error Rate: 0.0076 | Quality Trim Threshold: 14.5 |
Working
