EST details — SGN-E399175
| Search information |
| Request: 399175 | Match: SGN-E399175 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C183617 | Clone name: TUS-42-K7 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C183617 is on microarray TOM1 spot ID 1-1-2.3.2.21 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C26006 [cLEF-2-K11] | Trace: SGN-T59100 | EST: SGN-E244817 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C183617 [TUS-42-K7] | Trace: SGN-T194948 | EST: SGN-E393622 | Direction: 5' | Facility: INRA |
| Clone: SGN-C183617 [TUS-42-K7] | Trace: SGN-T194948 | EST: SGN-E399561 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E399175 | Length: 213 bp (928 bp untrimmed) |
| Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E399175 [] (trimmed)
AAAAATATCATTAATTTATTATATTAATAGAGACTTATCTAGAAGGGGACTTACATATATATTGGATAAGAGTATTACACTTGTACAAATATTTA
TGATATATTTTTCTTATAATAATTAAGAGGGGATACACACATAACATTTGAGGTAGAAAAAAGAAAAATGAACCACAGATGATCATAATGTGACG
AATCGAATTTTTACTACCAAGAA
TGATATATTTTTCTTATAATAATTAAGAGGGGATACACACATAACATTTGAGGTAGAAAAAAGAAAAATGAACCACAGATGATCATAATGTGACG
AATCGAATTTTTACTACCAAGAA
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E399175] | SGN-U579697 | Tomato 200607 | Build 2 | 34 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T200251 [Download][View] | Facility Assigned ID: FA0AAD30AF04FM1 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.868 | Expected Error Rate: 0.0147 | Quality Trim Threshold: 14.5 |
Working
