EST details — SGN-E399178
Search information |
Request: 399178 | Match: SGN-E399178 |
Request From: SGN database generated link | Match Type: EST sequence internal identifier |
Clone information |
SGN ID: SGN-C183627 | Clone name: TUS-42-K17 |
| ||
Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C183627 is on microarray TOM1 spot ID 1-1-8.3.1.8 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing |
Clone: SGN-C32358 [cLEG-1-A15] | Trace: SGN-T64359 | EST: SGN-E248296 | Direction: 5' | Facility: TIGR |
Clone: SGN-C183627 [TUS-42-K17] | Trace: SGN-T195962 | EST: SGN-E394636 | Direction: 5' | Facility: INRA |
Clone: SGN-C183627 [TUS-42-K17] | Trace: SGN-T195962 | EST: SGN-E399179 | Direction: 5' | Facility: INRA |
Clone: SGN-C183627 [TUS-42-K17] | Trace: SGN-T199571 | EST: SGN-E398245 | Direction: 3' | Facility: INRA |
Sequence |
Sequence Id: SGN-E399178 | Length: 313 bp (925 bp untrimmed) |
Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E399178 [] (trimmed)
ACAATCGAAAAGGAATTCTTCTTTGATGCTGAGATACTATTCAGTGCATAATGCAATAAATCATGCCTGTGTATACTATCTATCTATAGTACAAT
GTTTACACATTTCTCCCTATTAACATACCCAGCTAAATTAGCTTTTACAAAGTTTTTCTTATTATTGCATTTCCTACTTCTCACTTCTTCTCCAG
TAGCTGAAGTGAACATGATGTGATGGTTTTGGATCATGTGTAATCAATAATACAGGCACGTAATTGGTCACACATCTGATACAACCAGTATATGA
TCACATCTGTGGTTTTGTCTCATCATCA
GTTTACACATTTCTCCCTATTAACATACCCAGCTAAATTAGCTTTTACAAAGTTTTTCTTATTATTGCATTTCCTACTTCTCACTTCTTCTCCAG
TAGCTGAAGTGAACATGATGTGATGGTTTTGGATCATGTGTAATCAATAATACAGGCACGTAATTGGTCACACATCTGATACAACCAGTATATGA
TCACATCTGTGGTTTTGTCTCATCATCA
Unigenes |
Current Unigene builds | |||||
[SGN-E399178] | SGN-U564724 | Tomato 200607 | Build 2 | 54 ESTs assembled | |
Follow SGN-U# link for detailed information and annotations |
Chromatogram |
SGN-ID: SGN-T199408 [Download][View] | Facility Assigned ID: FA0AAD30AF09FM1 |
Submitter: Koni | Sequencing Facility: INRA |
Quality processing |
Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
Sequence Entropy: 0.928 | Expected Error Rate: 0.0022 | Quality Trim Threshold: 14.5 |