EST details — SGN-E399342
| Search information |
| Request: 399342 | Match: SGN-E399342 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C183413 | Clone name: TUS-42-B19 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C183413 is on microarray TOM1 spot ID 1-1-6.2.1.6 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C32398 [cLEG-1-E7] | Trace: SGN-T64425 | EST: SGN-E248362 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C183413 [TUS-42-B19] | Trace: SGN-T195072 | EST: SGN-E393746 | Direction: 3' | Facility: INRA |
| Clone: SGN-C183413 [TUS-42-B19] | Trace: SGN-T195072 | EST: SGN-E399341 | Direction: 3' | Facility: INRA |
| Clone: SGN-C183413 [TUS-42-B19] | Trace: SGN-T196067 | EST: SGN-E394741 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E399342 | Length: 612 bp (904 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E399342 [] (trimmed)
CTGAGGCATGCAAGACTTTTGATCAAGCTAAGGAGGAATATAGCAAGGAGTTTGAAGAGAAGAAGACTGAGCTTCAACCCAAAGTTGTTGAAATT
TATGAAGCTGCTGCAGTTGAGATCAAGAGCTTAGTGAAGGAACCAAAGGGTGCAGGGCTGAAGAAAAACTCAGATGGGGTTCAGAAATTCCTTGA
TGACCTTGTCAAGATTGAATTTCCGGGATCAAAAGCTGTTAGCGAAGCAAGTTCAAACTTTGGGCCTTCCTATGTATCGGGCCCAATTATTTTTG
TGTTCGAAAAAGTTTCCACTTTCATAGTCACAGAAGATAAGAAGGAAGAGGAACCCGCGGCTGCTGATGACGTGCATGCACCAGCCGCCACGTCA
ACTGAAGAGGTGGAGGTGAAGGTGAAGGAGAAGGAGAAGGAGATAGTTATTGAGTCTGGAGAACCAAACAAGGAAGAAGCACCTGCTACTGTTGT
TGCTGACGTGGCACCTGCAACTAAGGTGGAAGAAGCACCAAAGGTGGTTTAATCATCGTATACGTCTAAAAATTTGGCATCTTTATCTTCTTCTT
TTTTTTTAATGTGTCATGGTTATTTACTGTGAGAAAAACTTT
TATGAAGCTGCTGCAGTTGAGATCAAGAGCTTAGTGAAGGAACCAAAGGGTGCAGGGCTGAAGAAAAACTCAGATGGGGTTCAGAAATTCCTTGA
TGACCTTGTCAAGATTGAATTTCCGGGATCAAAAGCTGTTAGCGAAGCAAGTTCAAACTTTGGGCCTTCCTATGTATCGGGCCCAATTATTTTTG
TGTTCGAAAAAGTTTCCACTTTCATAGTCACAGAAGATAAGAAGGAAGAGGAACCCGCGGCTGCTGATGACGTGCATGCACCAGCCGCCACGTCA
ACTGAAGAGGTGGAGGTGAAGGTGAAGGAGAAGGAGAAGGAGATAGTTATTGAGTCTGGAGAACCAAACAAGGAAGAAGCACCTGCTACTGTTGT
TGCTGACGTGGCACCTGCAACTAAGGTGGAAGAAGCACCAAAGGTGGTTTAATCATCGTATACGTCTAAAAATTTGGCATCTTTATCTTCTTCTT
TTTTTTTAATGTGTCATGGTTATTTACTGTGAGAAAAACTTT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E399342] | SGN-U580472 | Tomato 200607 | Build 2 | 105 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T200339 [Download][View] | Facility Assigned ID: FA0AAD30CA10RM1 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.966 | Expected Error Rate: 0.0083 | Quality Trim Threshold: 14.5 |
Working
