EST details — SGN-E399370
Search information |
Request: 399370 | Match: SGN-E399370 |
Request From: SGN database generated link | Match Type: EST sequence internal identifier |
Clone information |
SGN ID: SGN-C183539 | Clone name: TUS-42-H1 |
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Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C183539 is on microarray TOM1 spot ID 1-1-8.4.2.20 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing |
Clone: SGN-C34278 [cLEG-30-G1] | Trace: SGN-T69019 | EST: SGN-E255293 | Direction: 5' | Facility: TIGR |
Clone: SGN-C183539 [TUS-42-H1] | Trace: SGN-T196081 | EST: SGN-E394755 | Direction: 5' | Facility: INRA |
Clone: SGN-C183539 [TUS-42-H1] | Trace: SGN-T196081 | EST: SGN-E399371 | Direction: 5' | Facility: INRA |
Clone: SGN-C183539 [TUS-42-H1] | Trace: SGN-T196195 | EST: SGN-E394869 | Direction: 3' | Facility: INRA |
Sequence |
Sequence Id: SGN-E399370 | Length: 335 bp (892 bp untrimmed) |
Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E399370 [] (trimmed)
ATCCATATTATCAAACTTCATACACATAAGGCACATACTTTTGCACTTACATACAGAAATATCAAATACAGTACTAACAATTATCCTTCAAAATC
CAAAAAAAACAAAAGTGAAGGAAATGAAAAACACTTAAAAACCAAAACAACACAGAAACACAATCATAACATCCCAAAAGTAAAATTAAAAAAAC
ATTTCATTTCATTTAGTCTTTTTCCTTCTCCTTTTCCTCTTCAGCCTTTGAGTGGTATCCTGGTAATTTCTCCTTAATTTTGTCCAAAAATCCCT
TCTTCTCCTTCCCCTCCGCCTCATGCTCCACCGCAGCCGGTGGTGGTGGG
CAAAAAAAACAAAAGTGAAGGAAATGAAAAACACTTAAAAACCAAAACAACACAGAAACACAATCATAACATCCCAAAAGTAAAATTAAAAAAAC
ATTTCATTTCATTTAGTCTTTTTCCTTCTCCTTTTCCTCTTCAGCCTTTGAGTGGTATCCTGGTAATTTCTCCTTAATTTTGTCCAAAAATCCCT
TCTTCTCCTTCCCCTCCGCCTCATGCTCCACCGCAGCCGGTGGTGGTGGG
Unigenes |
Current Unigene builds | |||||
[SGN-E399370] | SGN-U581375 | Tomato 200607 | Build 2 | 231 ESTs assembled | |
Follow SGN-U# link for detailed information and annotations |
Chromatogram |
SGN-ID: SGN-T196195 [Download][View] | Facility Assigned ID: FA0AAD30CD01FM1 |
Submitter: Koni | Sequencing Facility: INRA |
Quality processing |
Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
Sequence Entropy: 0.906 | Expected Error Rate: 0.0042 | Quality Trim Threshold: 14.5 |