EST details — SGN-E399371

Search information 
Request: 399371Match: SGN-E399371
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C183539Clone name: TUS-42-H1
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C183539 is on microarray TOM1 spot ID 1-1-8.4.2.20 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C34278 [cLEG-30-G1] Trace: SGN-T69019 EST: SGN-E255293 Direction: 5' Facility: TIGR
Clone: SGN-C183539 [TUS-42-H1] Trace: SGN-T196081 EST: SGN-E394755 Direction: 5' Facility: INRA
Clone: SGN-C183539 [TUS-42-H1] Trace: SGN-T196195 EST: SGN-E394869 Direction: 3' Facility: INRA
Clone: SGN-C183539 [TUS-42-H1] Trace: SGN-T196195 EST: SGN-E399370 Direction: 3' Facility: INRA
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Sequence 
Sequence Id: SGN-E399371Length: 465 bp (937 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E399371 [] (trimmed) GAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGAAAAAAATATCTGGTGATCA
CAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGA
AATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAG
AAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATG
AAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCCC
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E399371] SGN-U581375 Tomato 200607 Build 2 231 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T196081 [Download][View] Facility Assigned ID: FA0AAD30CD01RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.920 Expected Error Rate: 0.0008 Quality Trim Threshold: 14.5