EST details — SGN-E399572
| Search information |
| Request: 399572 | Match: SGN-E399572 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C183474 | Clone name: TUS-42-E8 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C183474 is on microarray TOM1 spot ID 1-1-1.1.2.20 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C34371 [cLEG-30-K9] | Trace: SGN-T69034 | EST: SGN-E255308 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C183474 [TUS-42-E8] | Trace: SGN-T1764 | EST: SGN-E378803 | Direction: 5' | Facility: Giov. Lab |
| Clone: SGN-C183474 [TUS-42-E8] | Trace: SGN-T196016 | EST: SGN-E394690 | Direction: 5' | Facility: INRA |
| Clone: SGN-C183474 [TUS-42-E8] | Trace: SGN-T200287 | EST: SGN-E399244 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E399572 | Length: 442 bp (945 bp untrimmed) |
| Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E399572 [] (trimmed)
TACTTTTTTTTGAACTTGCACTTTGTTTAAAAACCAACACAGCAAAATTACCTAATGTTTGAAGTAAAAGGCAACTTCAAATAAAATACAACAAA
AATATTTTTGTCCATAAAAAAAATAAAGGTAATAAATTCTGCAACACCAAACTTACAAGCTAGTATCCTAATCAACACAAAAGGATCAAAGTAAT
TATCCAAACAAATAAAAGATAAATGCAAAACAAAACTTTCCCGGAATCAATTGAGCAGGTTAAATATCATCGGCTGCCATCTCAAACCTATGCCT
TACGGCTTGTCCCCAAACTCGGAAAGAGGGGTCATCTGATCCTTCAAACCCTTCCCCTTGCGGAAATCAAGGACGAATTGATGACCTTGGGACCC
AGCTTCCAAGGGGGCAAAGGACATCATTTCCCAAGGATCAAACCCCCCCTGGGGGAAGGCTT
AATATTTTTGTCCATAAAAAAAATAAAGGTAATAAATTCTGCAACACCAAACTTACAAGCTAGTATCCTAATCAACACAAAAGGATCAAAGTAAT
TATCCAAACAAATAAAAGATAAATGCAAAACAAAACTTTCCCGGAATCAATTGAGCAGGTTAAATATCATCGGCTGCCATCTCAAACCTATGCCT
TACGGCTTGTCCCCAAACTCGGAAAGAGGGGTCATCTGATCCTTCAAACCCTTCCCCTTGCGGAAATCAAGGACGAATTGATGACCTTGGGACCC
AGCTTCCAAGGGGGCAAAGGACATCATTTCCCAAGGATCAAACCCCCCCTGGGGGAAGGCTT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E399572] | SGN-U596331 | Tomato 200607 | Build 2 | 1 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T200454 [Download][View] | Facility Assigned ID: FA0AAD30BC04FM1 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.931 | Expected Error Rate: 0.0225 | Quality Trim Threshold: 14.5 |
Working
