EST details — SGN-E538446
Search information |
Request: 538446 | Match: SGN-E538446 |
Request From: SGN database generated link | Match Type: EST sequence internal identifier |
Clone information |
SGN ID: SGN-C189382 | Clone name: TUS-57-K12 |
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Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing |
Clone: SGN-C61682 [cLEM-19-C16] | Trace: SGN-T86233 | EST: SGN-E272235 | Direction: 5' | Facility: TIGR |
Clone: SGN-C189382 [TUS-57-K12] | Trace: SGN-T339322 | EST: SGN-E538447 | Direction: 5' | Facility: INRA (MWG) |
Sequence |
Sequence Id: SGN-E538446 | Length: 716 bp (912 bp untrimmed) |
Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E538446 [] (trimmed)
AAACAACAAAAAAAAGTTATTACCCCTTTATTATTATAATAAACTAGAGATCAAATCTCATATCATCTTTAATCAAACCATGACAAACTGAACCC
TGGACAAGATTACACACATAGCTTTAAAAAAAAACTATGTAAAATATCCCACCCGACCACCTAGACCTAGGCATATATTAATATTAACATATGCC
CTCATTGTAACCATATTATATTAAAATATAGTTTTAGTAATAATAATAGTAGCAGTAAATAAAATACTCAACTAAAAAACACAATAAACACAACC
AAATTTCAATATAAAAAAAAAAAAAAACCATCATTCATCAACCATTTGAATTTTACTCTTCAACTTTCTCTGGCTCCTCAGATGCAGGGGCAGAT
TCCTCTGTTTTCTCTGCTTCGGGTTCTGCAACTGGGGCTGCTTCGGGTTCAGCTACGGGTGCTGGAGCCTCCTCAACGGGTGCTGCAGCAACCGG
TTCCTCAGCTGCGGCTGCAGGTTCTTCTGCAGCCACAGGTTCTTCAACTGGAGCTGCAACAGGTTCTGCTGCAACTGCCACTGGCTCTTCTGATT
CTGCGGCTACAGGTTCTGCAGCCGCAGGCTCTTCAGCTACAGGGGCTGCTACTTCCTCCGCAGCAGGAGCAGCCTCTTCTGGTGCTGGTGCTGAT
TCGACCTCAACATCCTTTTCTACAGCGGGGGCTGGTTCCTCCGCCTGTTGA
TGGACAAGATTACACACATAGCTTTAAAAAAAAACTATGTAAAATATCCCACCCGACCACCTAGACCTAGGCATATATTAATATTAACATATGCC
CTCATTGTAACCATATTATATTAAAATATAGTTTTAGTAATAATAATAGTAGCAGTAAATAAAATACTCAACTAAAAAACACAATAAACACAACC
AAATTTCAATATAAAAAAAAAAAAAAACCATCATTCATCAACCATTTGAATTTTACTCTTCAACTTTCTCTGGCTCCTCAGATGCAGGGGCAGAT
TCCTCTGTTTTCTCTGCTTCGGGTTCTGCAACTGGGGCTGCTTCGGGTTCAGCTACGGGTGCTGGAGCCTCCTCAACGGGTGCTGCAGCAACCGG
TTCCTCAGCTGCGGCTGCAGGTTCTTCTGCAGCCACAGGTTCTTCAACTGGAGCTGCAACAGGTTCTGCTGCAACTGCCACTGGCTCTTCTGATT
CTGCGGCTACAGGTTCTGCAGCCGCAGGCTCTTCAGCTACAGGGGCTGCTACTTCCTCCGCAGCAGGAGCAGCCTCTTCTGGTGCTGGTGCTGAT
TCGACCTCAACATCCTTTTCTACAGCGGGGGCTGGTTCCTCCGCCTGTTGA
Unigenes |
Current Unigene builds | |||||
[SGN-E538446] | SGN-U581194 | Tomato 200607 | Build 2 | 457 ESTs assembled | |
Follow SGN-U# link for detailed information and annotations |
Chromatogram |
SGN-ID: SGN-T339321 [Download][View] | Facility Assigned ID: TUS57K12_P1 |
Submitter: Koni | Sequencing Facility: INRA (MWG) |
Quality processing |
Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
Sequence Entropy: 0.960 | Expected Error Rate: 0.0027 | Quality Trim Threshold: 14.5 |