EST details — SGN-E538941
| Search information |
| Request: 538941 | Match: SGN-E538941 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C189686 | Clone name: TUS-58-H4 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C73249 [cLER-3-P1] | Trace: SGN-T92336 | EST: SGN-E277448 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C189686 [TUS-58-H4] | Trace: SGN-T339818 | EST: SGN-E538943 | Direction: 5' | Facility: INRA (MWG) |
| Sequence |
| Sequence Id: SGN-E538941 | Length: 601 bp (906 bp untrimmed) |
| Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E538941 [] (trimmed)
ATCATATAATTAGGTACTCATAAATCCAAAACATAAACCGAATAGTACAAGACACAAAGAGTTTGTTGGAATTAAGACAAAAAAGAAAAAAGACC
TAAGTAGCATTTAAAAACAAAGTGTCCCTAAAGACAATTTTGTTCCTAATATGAAACTTAGTAGCCTTCTGGCTTGTAGGCAATGAAACTGATAC
ACTGCACTTGACGCACATTGTCGAATCCAATGATTCTGACCCATGCTTGTGGGTATGCCTTTTTAGCCTCTTGAACCTCAGCCAACACTTGGGTT
GCATCAGTGCACCCAAACATAGGCAACTTCCACATGGTCCAGTACCTTCCATCATAGTATCCTGGTGACTTGTTGTTCTCACGGTAGACAAATCC
GTGCTCAGTCTCAAATTCCAAGCAAGGAACCCATCCATTTTTCAAAAGGTACTCAATTTCACTAAGCAATTGCTCGTCAGACAAATCAGGAAGGT
ATGAGAGTGTCTCGTACTTCTTCATGTTAATTGGTGGCCACACCTGCATGCAGCTAACTCTTCCACCATTGCTAGCAATGGAAGTGATGTCAAGG
TTTTGCTTCTTTGTAACAGGGAAAGTGGCTG
TAAGTAGCATTTAAAAACAAAGTGTCCCTAAAGACAATTTTGTTCCTAATATGAAACTTAGTAGCCTTCTGGCTTGTAGGCAATGAAACTGATAC
ACTGCACTTGACGCACATTGTCGAATCCAATGATTCTGACCCATGCTTGTGGGTATGCCTTTTTAGCCTCTTGAACCTCAGCCAACACTTGGGTT
GCATCAGTGCACCCAAACATAGGCAACTTCCACATGGTCCAGTACCTTCCATCATAGTATCCTGGTGACTTGTTGTTCTCACGGTAGACAAATCC
GTGCTCAGTCTCAAATTCCAAGCAAGGAACCCATCCATTTTTCAAAAGGTACTCAATTTCACTAAGCAATTGCTCGTCAGACAAATCAGGAAGGT
ATGAGAGTGTCTCGTACTTCTTCATGTTAATTGGTGGCCACACCTGCATGCAGCTAACTCTTCCACCATTGCTAGCAATGGAAGTGATGTCAAGG
TTTTGCTTCTTTGTAACAGGGAAAGTGGCTG
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E538941] | SGN-U578689 | Tomato 200607 | Build 2 | 989 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T339816 [Download][View] | Facility Assigned ID: TUS58H04_P1 |
| Submitter: Koni | Sequencing Facility: INRA (MWG) |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.965 | Expected Error Rate: 0.0002 | Quality Trim Threshold: 12.5 |
Working
