EST details — SGN-E538941
Search information |
Request: 538941 | Match: SGN-E538941 |
Request From: SGN database generated link | Match Type: EST sequence internal identifier |
Clone information |
SGN ID: SGN-C189686 | Clone name: TUS-58-H4 |
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Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing |
Clone: SGN-C73249 [cLER-3-P1] | Trace: SGN-T92336 | EST: SGN-E277448 | Direction: 5' | Facility: TIGR |
Clone: SGN-C189686 [TUS-58-H4] | Trace: SGN-T339818 | EST: SGN-E538943 | Direction: 5' | Facility: INRA (MWG) |
Sequence |
Sequence Id: SGN-E538941 | Length: 601 bp (906 bp untrimmed) |
Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E538941 [] (trimmed)
ATCATATAATTAGGTACTCATAAATCCAAAACATAAACCGAATAGTACAAGACACAAAGAGTTTGTTGGAATTAAGACAAAAAAGAAAAAAGACC
TAAGTAGCATTTAAAAACAAAGTGTCCCTAAAGACAATTTTGTTCCTAATATGAAACTTAGTAGCCTTCTGGCTTGTAGGCAATGAAACTGATAC
ACTGCACTTGACGCACATTGTCGAATCCAATGATTCTGACCCATGCTTGTGGGTATGCCTTTTTAGCCTCTTGAACCTCAGCCAACACTTGGGTT
GCATCAGTGCACCCAAACATAGGCAACTTCCACATGGTCCAGTACCTTCCATCATAGTATCCTGGTGACTTGTTGTTCTCACGGTAGACAAATCC
GTGCTCAGTCTCAAATTCCAAGCAAGGAACCCATCCATTTTTCAAAAGGTACTCAATTTCACTAAGCAATTGCTCGTCAGACAAATCAGGAAGGT
ATGAGAGTGTCTCGTACTTCTTCATGTTAATTGGTGGCCACACCTGCATGCAGCTAACTCTTCCACCATTGCTAGCAATGGAAGTGATGTCAAGG
TTTTGCTTCTTTGTAACAGGGAAAGTGGCTG
TAAGTAGCATTTAAAAACAAAGTGTCCCTAAAGACAATTTTGTTCCTAATATGAAACTTAGTAGCCTTCTGGCTTGTAGGCAATGAAACTGATAC
ACTGCACTTGACGCACATTGTCGAATCCAATGATTCTGACCCATGCTTGTGGGTATGCCTTTTTAGCCTCTTGAACCTCAGCCAACACTTGGGTT
GCATCAGTGCACCCAAACATAGGCAACTTCCACATGGTCCAGTACCTTCCATCATAGTATCCTGGTGACTTGTTGTTCTCACGGTAGACAAATCC
GTGCTCAGTCTCAAATTCCAAGCAAGGAACCCATCCATTTTTCAAAAGGTACTCAATTTCACTAAGCAATTGCTCGTCAGACAAATCAGGAAGGT
ATGAGAGTGTCTCGTACTTCTTCATGTTAATTGGTGGCCACACCTGCATGCAGCTAACTCTTCCACCATTGCTAGCAATGGAAGTGATGTCAAGG
TTTTGCTTCTTTGTAACAGGGAAAGTGGCTG
Unigenes |
Current Unigene builds | |||||
[SGN-E538941] | SGN-U578689 | Tomato 200607 | Build 2 | 989 ESTs assembled | |
Follow SGN-U# link for detailed information and annotations |
Chromatogram |
SGN-ID: SGN-T339816 [Download][View] | Facility Assigned ID: TUS58H04_P1 |
Submitter: Koni | Sequencing Facility: INRA (MWG) |
Quality processing |
Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
Sequence Entropy: 0.965 | Expected Error Rate: 0.0002 | Quality Trim Threshold: 12.5 |