EST details — SGN-E539189
| Search information |
| Request: 539189 | Match: SGN-E539189 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C189829 | Clone name: TUS-58-N3 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C69428 [cLER-10-F1] | Trace: SGN-T94082 | EST: SGN-E278655 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C189829 [TUS-58-N3] | Trace: SGN-T349054 | EST: SGN-E548179 | Direction: 3' | Facility: INRA (MWG) |
| Sequence |
| Sequence Id: SGN-E539189 | Length: 789 bp (860 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E539189 [] (trimmed)
TCCAGCTTCGTCTTCTTCGTTTCTATCTTCACCATGTCACCAACAGCTATCCTAAACCCTCGAATTCCAAACTTCACTCCGTTTCCTCTATTCAA
ACTTCAATTCCTCAACTCACCTCCTTCATTTCCCATAAAGACTTTTCGCTCCCAAATTCCTCCTCACTCTCTCAACTTCTCCCTTCAAAACAACT
CACAGCAAACCCATTTCTCTCGAGAAGACGAAGAACATGTAATCGGAGACTGTATAGTGTTTGAAGAAGGAATTTTCGACGACCCTTTTGTTCAA
AAACCAGACAACAACCAAAATAAGCCACAAAACAACAATAAGAAGAAATCAACAGAAATTCAGTCCGAAAATTTAATTCCTGAAGAATGGGTTGA
AGTTCAGAGGGAAATTAATATTACTAAGAAGGAAAGGCGTAAGCTTTCACAGCAATTGGAGTTTGGGCAACGTGCGGAGAGGAGGAGGCTTGATT
TAATGCCAATTGGTAGTAACAGTAATGTGAGAGGCAGTAGTATTGAGGATTATTTGAAAGCGAGAGAAGAAAAATTGAAGCAATTGAAGCCGCTT
GTGCTTGAAAACCCAGATTTTTCTAAGGTTAAAAAGGATAAGAATGAGAAGAAGATGAAGAAGAAGAGTGATGCTGAATTGAGTGAAAGTGAGGA
GGAGAACTCCGTTTTGAGGGTTTCCAGTGAAAGGGTATTGCCAAGAGATCCTAGATCAGCGGTTTATGGTGGGTGGATTAGGAAGATATTAAGGA
CTTCTTCAACAGTGGGATTTATGAGGCAA
ACTTCAATTCCTCAACTCACCTCCTTCATTTCCCATAAAGACTTTTCGCTCCCAAATTCCTCCTCACTCTCTCAACTTCTCCCTTCAAAACAACT
CACAGCAAACCCATTTCTCTCGAGAAGACGAAGAACATGTAATCGGAGACTGTATAGTGTTTGAAGAAGGAATTTTCGACGACCCTTTTGTTCAA
AAACCAGACAACAACCAAAATAAGCCACAAAACAACAATAAGAAGAAATCAACAGAAATTCAGTCCGAAAATTTAATTCCTGAAGAATGGGTTGA
AGTTCAGAGGGAAATTAATATTACTAAGAAGGAAAGGCGTAAGCTTTCACAGCAATTGGAGTTTGGGCAACGTGCGGAGAGGAGGAGGCTTGATT
TAATGCCAATTGGTAGTAACAGTAATGTGAGAGGCAGTAGTATTGAGGATTATTTGAAAGCGAGAGAAGAAAAATTGAAGCAATTGAAGCCGCTT
GTGCTTGAAAACCCAGATTTTTCTAAGGTTAAAAAGGATAAGAATGAGAAGAAGATGAAGAAGAAGAGTGATGCTGAATTGAGTGAAAGTGAGGA
GGAGAACTCCGTTTTGAGGGTTTCCAGTGAAAGGGTATTGCCAAGAGATCCTAGATCAGCGGTTTATGGTGGGTGGATTAGGAAGATATTAAGGA
CTTCTTCAACAGTGGGATTTATGAGGCAA
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E539189] | SGN-U567202 | Tomato 200607 | Build 2 | 12 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T340064 [Download][View] | Facility Assigned ID: TUS58N03_Q1 |
| Submitter: Koni | Sequencing Facility: INRA (MWG) |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.962 | Expected Error Rate: 0.0051 | Quality Trim Threshold: 14.5 |
Working
