EST details — SGN-E539318
| Search information |
| Request: 539318 | Match: SGN-E539318 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C189904 | Clone name: TUS-59-A6 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C70069 [cLER-13-H24] | Trace: SGN-T94837 | EST: SGN-E284143 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C189904 [TUS-59-A6] | Trace: SGN-T340190 | EST: SGN-E539315 | Direction: 3' | Facility: INRA (MWG) |
| Sequence |
| Sequence Id: SGN-E539318 | Length: 690 bp (883 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E539318 [] (trimmed)
CTATGACAGTGATGCCGGATCTTCCACCGGTTAAAACAAAGCTCGATAAACCAAATCCGACAGCTGAATCCAGAGAAACACCGGTTGCGAGTGCG
ACTGAAACCGGTGAAAGGACGGTTCAACAGCAACAACAGAGTTATCCAAGTAGTCCACTATGGCATTACCCAGCACCACCGGTGCAAACCATACC
CGTTTACTATGTCCCTGGTTCGGTTCAGCCAGGAAATATCCCGGTTCAACCCATTACATTAAGGGCTCCATATATTCATCCTTTTCCAGTTCCTC
CGAATCAATTACCCGTCGGGTATCCACCCGCTTCAAGTATGGGCCAAGTATATAGTGGATTGAGGCCGGTAATGAGTGTTGACCCGAATGAATTA
AGAGTTGTTACTGAAGGAATGAATTACTATGCAATTAGGAATTCAGGAGTTGTTCCGGGTTACGGAGGTCCAGTTAGCGAAGAAATGCACGGATC
CGGATGTGATGGAATGTCGGGTCGGGTCTCCCAATGATCAAACGTTTGATTGAGAAGCATATCTTGTGTGCTACCGTTTGTGTTAATCATTTTGA
TATAATTTGAAGCAAAAGTTTCCTGAATCGCAAATAAATTGTAGTAATTGATAATCTATCCTCCAACTGTAATATGTTAGTATTTGATTAGTAAA
AAAGCATTTGAGCAAAGTATCTTCT
ACTGAAACCGGTGAAAGGACGGTTCAACAGCAACAACAGAGTTATCCAAGTAGTCCACTATGGCATTACCCAGCACCACCGGTGCAAACCATACC
CGTTTACTATGTCCCTGGTTCGGTTCAGCCAGGAAATATCCCGGTTCAACCCATTACATTAAGGGCTCCATATATTCATCCTTTTCCAGTTCCTC
CGAATCAATTACCCGTCGGGTATCCACCCGCTTCAAGTATGGGCCAAGTATATAGTGGATTGAGGCCGGTAATGAGTGTTGACCCGAATGAATTA
AGAGTTGTTACTGAAGGAATGAATTACTATGCAATTAGGAATTCAGGAGTTGTTCCGGGTTACGGAGGTCCAGTTAGCGAAGAAATGCACGGATC
CGGATGTGATGGAATGTCGGGTCGGGTCTCCCAATGATCAAACGTTTGATTGAGAAGCATATCTTGTGTGCTACCGTTTGTGTTAATCATTTTGA
TATAATTTGAAGCAAAAGTTTCCTGAATCGCAAATAAATTGTAGTAATTGATAATCTATCCTCCAACTGTAATATGTTAGTATTTGATTAGTAAA
AAAGCATTTGAGCAAAGTATCTTCT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E539318] | SGN-U585430 | Tomato 200607 | Build 2 | 19 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T340193 [Download][View] | Facility Assigned ID: TUS59A06_Q1 |
| Submitter: Koni | Sequencing Facility: INRA (MWG) |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.971 | Expected Error Rate: 0.0188 | Quality Trim Threshold: 12.5 |
Working
