EST details — SGN-E539666
| Search information |
| Request: 539666 | Match: SGN-E539666 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C190108 | Clone name: TUS-59-I18 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C77012 [cLES-1-G13] | Trace: SGN-T97275 | EST: SGN-E283599 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C77012 [cLES-1-G13] | Trace: SGN-T97276 | EST: SGN-E283600 | Direction: 3' | Facility: TIGR |
| Clone: SGN-C190108 [TUS-59-I18] | Trace: SGN-T340543 | EST: SGN-E539668 | Direction: 5' | Facility: INRA (MWG) |
| Sequence |
| Sequence Id: SGN-E539666 | Length: 850 bp (909 bp untrimmed) |
| Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E539666 [] (trimmed)
AGAGAAAAGTTTGAGTCCTCACATCGAATCCAATCAAGCACAACTACAAAGACATGAAGAAATGAAATTGTAGTGAGTGAATATATCCATTGTTT
TCCTAATTTGTTAGGATGGAAAAGAAATGATTATTAAGAAGCAGAGCCTATATAACTGAAGATTGTCCTTACTCTTCAAAATCACGCGGAGAGCG
AATAAAGAAAAGCTCAAATCAGAATGGGAAATGTTATTCTCTGCGTTTTTAATATCAGGCAATGAGGTCATGGCTATAAATTCCATTCTGCATCC
ATGGCTGACTTCAGAGACTTTCGTTTCTCCAATCTTTAAATAAGTGTACCTGCTTAATTTGCAGCCACTAATTTCCAGAAATGTCGAAGAACTAT
TAACAGCAGATGGACAGTTGAACATGAAAATGGGCTCTGCTGATCTAAGCCCACTATAGTATGATCGGAAGATTGTATCGGATTGGTCGAAGAAC
AGAAGCTGAGGACTGAAAGAGCATAGATCATCTTGTGTTTGTAAAGCTGGATCTACCAGGTGAATTGTCTTACTATTATAGTTGATGGCTTGCAC
ATACAGCTTCTTGGAGAGGATCGACATAACCGTTTGGTTATCTTCACAACTAAATTCAAATTTCGGATCATCTCCACAAATTTCTGGGTCACTGT
TTAAGTGAAAAGGGTAGCTGATGTCTCGGATATGACCACAAGCAGAAGGGGTCTTCGGATAACAGTAATCGGGCTTCATCTTCCAAGCATTGCAT
GTTTGCAGAAAGATGAGGATTAATGTTGAATATTTTAGCAGAGAAGTATCCTTAGACATTTCTGTACTACAACAGCTGAGACCTCACATT
TCCTAATTTGTTAGGATGGAAAAGAAATGATTATTAAGAAGCAGAGCCTATATAACTGAAGATTGTCCTTACTCTTCAAAATCACGCGGAGAGCG
AATAAAGAAAAGCTCAAATCAGAATGGGAAATGTTATTCTCTGCGTTTTTAATATCAGGCAATGAGGTCATGGCTATAAATTCCATTCTGCATCC
ATGGCTGACTTCAGAGACTTTCGTTTCTCCAATCTTTAAATAAGTGTACCTGCTTAATTTGCAGCCACTAATTTCCAGAAATGTCGAAGAACTAT
TAACAGCAGATGGACAGTTGAACATGAAAATGGGCTCTGCTGATCTAAGCCCACTATAGTATGATCGGAAGATTGTATCGGATTGGTCGAAGAAC
AGAAGCTGAGGACTGAAAGAGCATAGATCATCTTGTGTTTGTAAAGCTGGATCTACCAGGTGAATTGTCTTACTATTATAGTTGATGGCTTGCAC
ATACAGCTTCTTGGAGAGGATCGACATAACCGTTTGGTTATCTTCACAACTAAATTCAAATTTCGGATCATCTCCACAAATTTCTGGGTCACTGT
TTAAGTGAAAAGGGTAGCTGATGTCTCGGATATGACCACAAGCAGAAGGGGTCTTCGGATAACAGTAATCGGGCTTCATCTTCCAAGCATTGCAT
GTTTGCAGAAAGATGAGGATTAATGTTGAATATTTTAGCAGAGAAGTATCCTTAGACATTTCTGTACTACAACAGCTGAGACCTCACATT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E539666] | SGN-U575324 | Tomato 200607 | Build 2 | 22 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T340541 [Download][View] | Facility Assigned ID: TUS59I18_P1 |
| Submitter: Koni | Sequencing Facility: INRA (MWG) |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.967 | Expected Error Rate: 0.0072 | Quality Trim Threshold: 14.5 |
Working
