Notice: The contact form functionality has been restored. Apologies for any inconvenience.

EST details — SGN-E539750

Search information 
Request: 539750Match: SGN-E539750
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C190157Clone name: TUS-59-K19
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C77752 [cLES-3-C5] Trace: SGN-T97751 EST: SGN-E284730 Direction: 5' Facility: TIGR
Clone: SGN-C190157 [TUS-59-K19] Trace: SGN-T340627 EST: SGN-E539752 Direction: 5' Facility: INRA (MWG)
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E539750Length: 786 bp (907 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E539750 [] (trimmed) ATATTCGACCATTGTATTACACAGCCATTACAAAAAGCCCTAAGGAAACACAAAATGCTTTCAACATGATATTCATAACCACACTGACATGAGAA
GTAAAAAAAACTAGATAAAACTCCGCCTGCATCCAGGATCAACCCACAATAACAAATCTGCATCACTTTAAGCCTTGTTAGCAATGTTGTTAGAA
AGCCAATCAAGTCCCTCATAAAGCCCCTCGCCAGAAGTTGCACAAGTGCTCTGGATGTACCAGTGACGCTGCCTGAGGGAGTGCAGTCCAAGCTT
ATCAGTTATTTCAGCAGCATTCATTGCGTTAGGAAGATCTTGTTTGTTAGCAAATACTAGAAGCACAGCATCCCGAAGTTCATCCTCGTTCAACA
TCCTATGCAATTCATCTCTTGCTTCTACAACACGGTCTCTATCATTGCTATCAACCACAAAAATGAGACCCTGAGTGTTCTGGAAGTAGTGCCTC
CACAATGGACGGATCTTGTCCTGACCTCCGACATCCCAAACAGTGAAGCTGATGTTCTTGTACTCAACAGTCTCCACATTGAAACCAATGGTAGG
AATAGTAGTCACGATCTCTCCCAGCTTCAACTTGTACAATATGGTGGTCTTACCAGCTGCATCAAGACCAACCATTAGAATGCGCATTTCCTTCT
TGGCGAAAAGCCGACTGAAGAGCTTGGTGAATGTGAGCCCCATCACGCTTCCTTGATGATGATCCCTGAAAAGAGCTTTTAGAATGAGGGATCTA
TTGAGAGAGAAACCGGAGNTTTTTTT
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E539750] SGN-U580248 Tomato 200607 Build 2 52 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T340625 [Download][View] Facility Assigned ID: TUS59K19_P1
Submitter: Koni Sequencing Facility: INRA (MWG)
Funding Organization: INRA
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.981 Expected Error Rate: 0.0018 Quality Trim Threshold: 14.5