EST details — SGN-E539888
| Search information |
| Request: 539888 | Match: SGN-E539888 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C190236 | Clone name: TUS-59-O2 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C78881 [cLES-7-B13] | Trace: SGN-T98910 | EST: SGN-E288154 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C190236 [TUS-59-O2] | Trace: SGN-T340760 | EST: SGN-E539885 | Direction: 3' | Facility: INRA (MWG) |
| Sequence |
| Sequence Id: SGN-E539888 | Length: 783 bp (894 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E539888 [] (trimmed)
TCGTTATCGAGGGGGGTAACGGGGGTAGTGGTCTCCAAATGCCGGCGAATTATGGGGACTATTTCATTGGACCGGGGTTTGAGCAATTGATCCAG
AATTTGGCAGAAAATGATCCAAACCGATATGGGACTCCTCCGGCGTCGAGAGCAGCGGTGGAGGGGCTCCCTACCATCAAAGTTGATGAGGAATT
GATGCGTTCTGAACTGGCACAGTGTGCTGTTTGTAAGGATGATTTTGAGATGGGGTCAGATGTGATACAGATGCCTTGTAAGCATGTTTATCATA
AGGATTGTATCATACCGTGGCTTGAGTTGCACAGTTCTTGCCCGGTTTGTCGCTATGAGTTGCCAACGGATGAGCCTGAGAATGAGAACAGGCAA
AGAGACAATGATGGGGACTCGAGCGGGGATGGTTCTGCTTCTGGAAGTGGGGGATCAGGGAGAAGGTTTACTACAATATCATTGCCATGGCCTTT
GGGAAGCTTTGGAGCATCATCTAGCCAGGGATGATCCGAGTCTCGTGGGCAGCGGAACAGGGAGTCTAATTAGGTGGTATCCTTGCTTGCAGGTT
GTATCATGGATGACAAAGTTGGAGGAGTTGTTGGGTAGATAATTAGAAAATGCTACAAAGGTAAAGGATTANGTTTCATCTCTTAAACATAGATA
CAGGGTCTACACAAACCCCAGATAGTATTGCAAGATGTTTGTCTGAATGTTTTGCATCAGATGTCCAAAGTTTTCATTTATGCTTCATCAATCGC
GAAATTTGCGGATTGNTTTAGTC
AATTTGGCAGAAAATGATCCAAACCGATATGGGACTCCTCCGGCGTCGAGAGCAGCGGTGGAGGGGCTCCCTACCATCAAAGTTGATGAGGAATT
GATGCGTTCTGAACTGGCACAGTGTGCTGTTTGTAAGGATGATTTTGAGATGGGGTCAGATGTGATACAGATGCCTTGTAAGCATGTTTATCATA
AGGATTGTATCATACCGTGGCTTGAGTTGCACAGTTCTTGCCCGGTTTGTCGCTATGAGTTGCCAACGGATGAGCCTGAGAATGAGAACAGGCAA
AGAGACAATGATGGGGACTCGAGCGGGGATGGTTCTGCTTCTGGAAGTGGGGGATCAGGGAGAAGGTTTACTACAATATCATTGCCATGGCCTTT
GGGAAGCTTTGGAGCATCATCTAGCCAGGGATGATCCGAGTCTCGTGGGCAGCGGAACAGGGAGTCTAATTAGGTGGTATCCTTGCTTGCAGGTT
GTATCATGGATGACAAAGTTGGAGGAGTTGTTGGGTAGATAATTAGAAAATGCTACAAAGGTAAAGGATTANGTTTCATCTCTTAAACATAGATA
CAGGGTCTACACAAACCCCAGATAGTATTGCAAGATGTTTGTCTGAATGTTTTGCATCAGATGTCCAAAGTTTTCATTTATGCTTCATCAATCGC
GAAATTTGCGGATTGNTTTAGTC
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E539888] | SGN-U569746 | Tomato 200607 | Build 2 | 3 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T340763 [Download][View] | Facility Assigned ID: TUS59O02_Q1 |
| Submitter: Koni | Sequencing Facility: INRA (MWG) |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.975 | Expected Error Rate: 0.0061 | Quality Trim Threshold: 14.5 |
Working
