EST details — SGN-E540263
| Search information |
| Request: 540263 | Match: SGN-E540263 |
| Request From: web user | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C190456 | Clone name: TUS-60-H6 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C75339 [cLES-13-L12] | Trace: SGN-T100475 | EST: SGN-E286162 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C190456 [TUS-60-H6] | Trace: SGN-T341141 | EST: SGN-E540266 | Direction: 5' | Facility: INRA (MWG) |
| Sequence |
| Sequence Id: SGN-E540263 | Length: 775 bp (899 bp untrimmed) |
| Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E540263 [] (trimmed)
ATAAAATAAATGTACAATATTTATCTTACACAGGAACAAAGTATAATGCGCCTTGTAATTTTGACCAACCGAAATCAACATAATAGAGATATTGG
ATTTAACTACTTCCTAATTCTACTGGCAACTTATTTCAGTATCAAAATGGAAATAAAGTGATTCAATTTAGAAATTTGAACACTGAAATGCTACA
ATTTGGGGGATGAAATAAGTTATGAAAGCCTTTTGGCCTCACTGACATTTTCAGACAGGAAACCGGGAAACTTACCAGAAATCAAATTATACCTT
CACGCTAAACCATTATTAGCATACAAGGACATCAATGTTAACTATAAAAACAAAAAGGAACCATGAAAGCAATACAGATGATTGATTAAAGTATC
CCTACCGAAAAAATAATGCAATTTGACACAGTTTGCAAACAGGCAACAAAATGCTGATACATAAAAGGCGTAACAGTGCAATTTGACACAGTATG
CAAACGGGCAACAAAAGGCTGATACATAAAAGGCGTTCCACATACCTGGGCTGGGAATGTTGAAGGATAAGCACCATAACCACCACTGGAGGGCA
CTGATGCTGCAGGCGCTTGAGGAGGTGCATAGCCAGTTCCATAACTGCCGTAAGCACCATATGCCGCCTGTTGTGCATAACCAGGATTCCACTGC
TGCGATTGGGCTTGTGCAGCCTGTGGCCAGGTTTGACCTTGTGCACCATAACCTGCAGGCCATTGATTCTGTGCTCCAGGATATGCACCAACCGC
TGAAGGGTTGGTTGC
ATTTAACTACTTCCTAATTCTACTGGCAACTTATTTCAGTATCAAAATGGAAATAAAGTGATTCAATTTAGAAATTTGAACACTGAAATGCTACA
ATTTGGGGGATGAAATAAGTTATGAAAGCCTTTTGGCCTCACTGACATTTTCAGACAGGAAACCGGGAAACTTACCAGAAATCAAATTATACCTT
CACGCTAAACCATTATTAGCATACAAGGACATCAATGTTAACTATAAAAACAAAAAGGAACCATGAAAGCAATACAGATGATTGATTAAAGTATC
CCTACCGAAAAAATAATGCAATTTGACACAGTTTGCAAACAGGCAACAAAATGCTGATACATAAAAGGCGTAACAGTGCAATTTGACACAGTATG
CAAACGGGCAACAAAAGGCTGATACATAAAAGGCGTTCCACATACCTGGGCTGGGAATGTTGAAGGATAAGCACCATAACCACCACTGGAGGGCA
CTGATGCTGCAGGCGCTTGAGGAGGTGCATAGCCAGTTCCATAACTGCCGTAAGCACCATATGCCGCCTGTTGTGCATAACCAGGATTCCACTGC
TGCGATTGGGCTTGTGCAGCCTGTGGCCAGGTTTGACCTTGTGCACCATAACCTGCAGGCCATTGATTCTGTGCTCCAGGATATGCACCAACCGC
TGAAGGGTTGGTTGC
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E540263] | SGN-U577631 | Tomato 200607 | Build 2 | 3 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T341138 [Download][View] | Facility Assigned ID: TUS60H06_P1 |
| Submitter: Koni | Sequencing Facility: INRA (MWG) |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.957 | Expected Error Rate: 0.0021 | Quality Trim Threshold: 20.5 |
Working
