EST details — SGN-E540404
| Search information |
| Request: 540404 | Match: SGN-E540404 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C190538 | Clone name: TUS-60-K16 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C76031 [cLES-16-J21] | Trace: SGN-T101012 | EST: SGN-E288286 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C190538 [TUS-60-K16] | Trace: SGN-T341282 | EST: SGN-E540407 | Direction: 5' | Facility: INRA (MWG) |
| Sequence |
| Sequence Id: SGN-E540404 | Length: 842 bp (901 bp untrimmed) |
| Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E540404 [] (trimmed)
ATAAAATTTACTCCATTGATAAAACATGTAGAAAGTAAATACAATATATTTTGAAAGTGCAGAATAATAGAATACAGGATAGGAGGAATTGCTTT
AATAAATTTGTTACTATTAGGAAAGATGAAGAAGGCATCTCAAGGATTTGCCATCGAGAAGCAGTTGAAAAGCTTCATTGATCTTCTCAAATGGT
AGTCTGTGAGTAATAAACTCGTCTAATTTGACCACCCCAGCCATGCATTGTTCAGCTAAAAAAGGGAGTTGGGATTTTCCTTTGAAGTCACCAAA
GACAGAAGCCACAATCCTTCTGCCATCGAACAGTTCCATTGGATGGAGTGATAGCAATTTTGGTGTCGGATGAATTCCTAAAACGATTGCCATGC
CCCATCCCTATAATAAGTAGAAAGAGGGGTTTCTTTTTAAATCTTCTATAATTCTGTAGATAAATAAATAGTACAAAAAAAAAAAGAAAAAAAAA
AACTTGCATCATGTGTGGATAAAAATGCCTCTCGAAGAACTTGCATATTTCCAGCACACTCAAAGCTATAGTCCACGCCCCCCTCGCTCATTTCC
CTTATTTTCTCATGGACGGGCACATCGATTTCTTTGGGATTGATGAAGTCAGTAATTCCAATTGCTTCACCTTTAATACGTTTTTCAGGGTTAAT
ATCCACCCCTATGATCTTTGAGGCGCCTCTGGTCCGTGCCCCTTCAACAACGGCCAAACCAACAGCTCCTAATCCAAAGACTGCCACCGTTTCCC
CTGTTTGAACGTCAGCCGTGTTCCACGCAGCCCCTAGACCAGTGGATACGCGCAGCTTAGCAAGGTCATCTTGTCAAGTGAG
AATAAATTTGTTACTATTAGGAAAGATGAAGAAGGCATCTCAAGGATTTGCCATCGAGAAGCAGTTGAAAAGCTTCATTGATCTTCTCAAATGGT
AGTCTGTGAGTAATAAACTCGTCTAATTTGACCACCCCAGCCATGCATTGTTCAGCTAAAAAAGGGAGTTGGGATTTTCCTTTGAAGTCACCAAA
GACAGAAGCCACAATCCTTCTGCCATCGAACAGTTCCATTGGATGGAGTGATAGCAATTTTGGTGTCGGATGAATTCCTAAAACGATTGCCATGC
CCCATCCCTATAATAAGTAGAAAGAGGGGTTTCTTTTTAAATCTTCTATAATTCTGTAGATAAATAAATAGTACAAAAAAAAAAAGAAAAAAAAA
AACTTGCATCATGTGTGGATAAAAATGCCTCTCGAAGAACTTGCATATTTCCAGCACACTCAAAGCTATAGTCCACGCCCCCCTCGCTCATTTCC
CTTATTTTCTCATGGACGGGCACATCGATTTCTTTGGGATTGATGAAGTCAGTAATTCCAATTGCTTCACCTTTAATACGTTTTTCAGGGTTAAT
ATCCACCCCTATGATCTTTGAGGCGCCTCTGGTCCGTGCCCCTTCAACAACGGCCAAACCAACAGCTCCTAATCCAAAGACTGCCACCGTTTCCC
CTGTTTGAACGTCAGCCGTGTTCCACGCAGCCCCTAGACCAGTGGATACGCGCAGCTTAGCAAGGTCATCTTGTCAAGTGAG
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E540404] | SGN-U581714 | Tomato 200607 | Build 2 | 20 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T341279 [Download][View] | Facility Assigned ID: TUS60K16_P1 |
| Submitter: Koni | Sequencing Facility: INRA (MWG) |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.968 | Expected Error Rate: 0.0038 | Quality Trim Threshold: 14.5 |
Working
