EST details — SGN-E540406

Search information 
Request: 540406Match: SGN-E540406
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C190539Clone name: TUS-60-K17
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C76054 [cLES-16-L15] Trace: SGN-T101136 EST: SGN-E288410 Direction: 5' Facility: TIGR
Clone: SGN-C190539 [TUS-60-K17] Trace: SGN-T349255 EST: SGN-E548380 Direction: 5' Facility: INRA (MWG)
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Sequence 
Sequence Id: SGN-E540406Length: 825 bp (887 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E540406 [] (trimmed) TTATTGATAAGTCAAAATTCAATATAGATAAATAAAATAGGACAGAATGAATATTTGACAAGTAAATGGAGACGAAAGAATATCCAAATGTTGAA
ATTAAATGCAAATAAGCCCAATACTCTTAATCAGTACAAATCAACTTAAACATAACGTAACATGAGAAAAATATTAATTGTCCACTTTAGTAGTC
TCTTTGCTGCGCTTCTGGTGTGCTAAATCAAGAAAACATGGAGTCAACACTTGTTCATATTCAGGCACTTTAGCATAACCAGGGAAATAATTGAT
ATCAATAATTAGATATCGATTTCCGTTTTCACTATCTCTTATCATGTCGAAATTAAAAAGATGAAGTTTCAAAGCATGTCGTAACTGCTTTGAAA
CTTGGTTAACGAAGCTTGATGGAGGCATAATCGCTGCCTCCATCAGCTTCGCTAAACTCTCATCGCTCTGTTCATTATCAGCGAAGTAAGAAATC
ACTCAATGACTTCCTTTTCACGCATTTTACGTGATCCCCTGCTACGTACACCTTGAAAATCACTCCCCCGTGGTTTACGAATTCCTGTAATACAA
TTGGGGTTTTTACTCCGTTTAATCCGTCCCGATTTAACACTAGACACATCTGATGAGCGTCAGCTGTAGCATTAGCGATCATCGCTTTTGCAATC
AGGGGAAATTTCATCCCCCGATTATCAATTTCATCCTGCAGGCTTTCGTTTGAGTCAACGAAAGCCTGCAGGGGAATTTCTAGGTTTTCAATTTT
CAATTGCTTAACTGCGTCGAGCATGGAGACTCGATTGTGGAGCTTCTCGATTGATTCAATCGGGC
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E540406] SGN-U581868 Tomato 200607 Build 2 2 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T341281 [Download][View] Facility Assigned ID: TUS60K17_P1
Submitter: Koni Sequencing Facility: INRA (MWG)
Funding Organization: INRA
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.963 Expected Error Rate: 0.0039 Quality Trim Threshold: 14.5