EST details — SGN-E540527
| Search information |
| Request: 540527 | Match: SGN-E540527 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C190608 | Clone name: TUS-60-N14 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C76877 [cLES-19-L7] | Trace: SGN-T101965 | EST: SGN-E287908 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C190608 [TUS-60-N14] | Trace: SGN-T349274 | EST: SGN-E548399 | Direction: 3' | Facility: INRA (MWG) |
| Sequence |
| Sequence Id: SGN-E540527 | Length: 748 bp (905 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E540527 [] (trimmed)
GGGTGATGAAGTTGTTCTTTTGGATACTTTTGTGAGTGTTTTTGGGATGAGGGTGAGGATTGCCCTAGCTGAAAAAGGGATTCAATATGAATACA
AAGAGGAGGATTTGATGAACAAAAGTCAGTTACTCTTACAAATGAATCCAATTCATAAGAAAATTCCAGTGTTGATTCACAATGGAAAACCAATT
TGTGAGTCACTCATAATTGTTGAGTACATTGATGAAGTTTGGAAGGACAAATCAACACCTTTGATGCCTAGTGATCCTTACAAGAGAGCTCATGC
TAGGTTTTGGGCTGATTATATTGGAAAAAAGATTTATGATGGTGGAATGAAAATTTGGAGCTCAAAAGTGGAAGAGCACAAAACAGCCAATAAAG
ATTTCATAGAGTGTTTGAAAGTGTTAGAAGGTGAATTGGGAGACAAACCATACTTTGATGGAAAAAATTTTGGACTTGTGGATATGGCTTTTATT
CCTTATTATAGTTGGTTTCCTGTTTATAAAAAACTTAGCAATTTAAATATTGAAGCAGAGTGTCCTAAATTTGTGGCATGGGCCAAAAGGTGTAT
GCAAAAGGAGAGTGTCTCTAAAACTCTTGTTGATCCTGACAAAATCTATGAGTTTATTGTCTTGTTTAGGCAGAAGATCGGTGTTGCCTAAAAAG
ACGGATCTGCGGATACATATTATGTATGTATGAAATAAGATTACCGTCATTCTGATTTGCTATATCTATTGGATAATGAAGTA
AAGAGGAGGATTTGATGAACAAAAGTCAGTTACTCTTACAAATGAATCCAATTCATAAGAAAATTCCAGTGTTGATTCACAATGGAAAACCAATT
TGTGAGTCACTCATAATTGTTGAGTACATTGATGAAGTTTGGAAGGACAAATCAACACCTTTGATGCCTAGTGATCCTTACAAGAGAGCTCATGC
TAGGTTTTGGGCTGATTATATTGGAAAAAAGATTTATGATGGTGGAATGAAAATTTGGAGCTCAAAAGTGGAAGAGCACAAAACAGCCAATAAAG
ATTTCATAGAGTGTTTGAAAGTGTTAGAAGGTGAATTGGGAGACAAACCATACTTTGATGGAAAAAATTTTGGACTTGTGGATATGGCTTTTATT
CCTTATTATAGTTGGTTTCCTGTTTATAAAAAACTTAGCAATTTAAATATTGAAGCAGAGTGTCCTAAATTTGTGGCATGGGCCAAAAGGTGTAT
GCAAAAGGAGAGTGTCTCTAAAACTCTTGTTGATCCTGACAAAATCTATGAGTTTATTGTCTTGTTTAGGCAGAAGATCGGTGTTGCCTAAAAAG
ACGGATCTGCGGATACATATTATGTATGTATGAAATAAGATTACCGTCATTCTGATTTGCTATATCTATTGGATAATGAAGTA
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E540527] | SGN-U580796 | Tomato 200607 | Build 2 | 12 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T341402 [Download][View] | Facility Assigned ID: TUS60N14_Q1 |
| Submitter: Koni | Sequencing Facility: INRA (MWG) |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.935 | Expected Error Rate: 0.0072 | Quality Trim Threshold: 12.5 |
Working
