EST details — SGN-E540727
| Search information |
| Request: 540727 | Match: SGN-E540727 |
| Request From: web user | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C190726 | Clone name: TUS-61-C12 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C88133 [cLET-7-C16] | Trace: SGN-T104074 | EST: SGN-E291821 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C190726 [TUS-61-C12] | Trace: SGN-T341605 | EST: SGN-E540730 | Direction: 5' | Facility: INRA (MWG) |
| Sequence |
| Sequence Id: SGN-E540727 | Length: 829 bp (886 bp untrimmed) |
| Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E540727 [] (trimmed)
CAAAAACTACTTTAATTCGTATTCTCGTCCAACATAACTCCAATTTTCAACTTTGAAAACAAATACTACTGTTTTCTAAATTACACAATTTTTAT
GTCCAAACGCCCACGAGCCTTTTTGTTACACTCATAGAGTTCTGTTTTTTGTCTTTGGAATTGCTTTCAATGGCTTTAATTTTCTAACAGTTACT
CCCATTCTATCTCGTGTATCCAAAGCCTCATCAAGAACAGAAACATCAATCTCCCAATCGAATTCACTCAACAACGCCCCAAGTACCAAATGCAA
CATCCGATGAGCCAATGGAATTCCAGCACAAATCCTTCTCCCAGCACCAAACGGAATAAACTCAAAATTCTGACCCCTATATTCAATATTCGAAT
CCAAGAACCTTTCTGGCTTGAAATCCAAAGGGTCTTTCCAACACTCGGGATCTCTTCCAATTGCCCAAGTGTTCACGAAAACTTGTGTGCCTTTA
GGGATATGATACCCCACGAATTCGGTATCTTGAATTGCCTTTCTTGGAACTAGAAATGGAATTGGAGGGTGTAATCTTAACGTTTCTTTTACAAC
AGCTTGCAAATACTTGTGATTATCGATGTCATTTTCTTCGAATTTCTTGGTATCTCCAAGAACCTCGGATAACTCGGTTTTAACCTTGTCCATTG
CCTCTGGATTGCACAGTAGCTCTGTCATCGCCCATTCTATGCTACTGCTTGTAGTCTCCGAACCAGCTAAGAATATTTCCAAAATTATCAAGATG
AGTTCTTGATCTGATATCTTCTCTGGTTCATCCTTCCCTTTGCCTTCATATTCAATAGAACTTCCAAAA
GTCCAAACGCCCACGAGCCTTTTTGTTACACTCATAGAGTTCTGTTTTTTGTCTTTGGAATTGCTTTCAATGGCTTTAATTTTCTAACAGTTACT
CCCATTCTATCTCGTGTATCCAAAGCCTCATCAAGAACAGAAACATCAATCTCCCAATCGAATTCACTCAACAACGCCCCAAGTACCAAATGCAA
CATCCGATGAGCCAATGGAATTCCAGCACAAATCCTTCTCCCAGCACCAAACGGAATAAACTCAAAATTCTGACCCCTATATTCAATATTCGAAT
CCAAGAACCTTTCTGGCTTGAAATCCAAAGGGTCTTTCCAACACTCGGGATCTCTTCCAATTGCCCAAGTGTTCACGAAAACTTGTGTGCCTTTA
GGGATATGATACCCCACGAATTCGGTATCTTGAATTGCCTTTCTTGGAACTAGAAATGGAATTGGAGGGTGTAATCTTAACGTTTCTTTTACAAC
AGCTTGCAAATACTTGTGATTATCGATGTCATTTTCTTCGAATTTCTTGGTATCTCCAAGAACCTCGGATAACTCGGTTTTAACCTTGTCCATTG
CCTCTGGATTGCACAGTAGCTCTGTCATCGCCCATTCTATGCTACTGCTTGTAGTCTCCGAACCAGCTAAGAATATTTCCAAAATTATCAAGATG
AGTTCTTGATCTGATATCTTCTCTGGTTCATCCTTCCCTTTGCCTTCATATTCAATAGAACTTCCAAAA
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E540727] | SGN-U572772 | Tomato 200607 | Build 2 | 2 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T341602 [Download][View] | Facility Assigned ID: TUS61C12_P1 |
| Submitter: Koni | Sequencing Facility: INRA (MWG) |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.956 | Expected Error Rate: 0.0013 | Quality Trim Threshold: 20.5 |
Working
