EST details — SGN-E540948
| Search information |
| Request: 540948 | Match: SGN-E540948 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C190853 | Clone name: TUS-61-H19 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C80610 [cLET-12-N11] | Trace: SGN-T105694 | EST: SGN-E293231 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C190853 [TUS-61-H19] | Trace: SGN-T341820 | EST: SGN-E540945 | Direction: 3' | Facility: INRA (MWG) |
| Sequence |
| Sequence Id: SGN-E540948 | Length: 765 bp (889 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E540948 [] (trimmed)
GATCAGAAAAACTGGAGAAAGATGATGAATGAAATTGAAGAAGCTGGTTCTGCTGTTTCAGTGCTGAGAACCCAGAGGGACAAGAACCAGGCTCT
TCCAAAGAACCTTGTTCTTGGAAGCTTGGTTAGATTTAAGCAGCTTAAGAAGTGGAACCTTGTTAGTGAGATTCTTGAATGGCTTCGAACTCAGC
ATTGGTGGGATTTTAATGAGATGGACTTTCTGATGCTTATTACAGCTTACGGGAAGCAAGGGGACTTCAGTAAAGCTGAAAGGATTTTAGGCTAC
ATGAATAAGAAGGGCTATCCTGCCAATGTGATATCACACACTGCTCTGATGGAGGCATATGGAAAAGGAGGTCAGTATGCCAAGGCAGAAGCGAT
ATTTCGGAGAATGCAAACTTCAGGCCCTGAGCCTTCTGCTATTACATACCAAATCATTCTCAAAATCTTTGTTGAGGGTGACAAGTTTAATGAAG
CTCAAGATGTCTTTGAAGCCCTTATGGATATGGATGCACCTCCTCTAAAACCAGACCAGAAAATGTTCCACATGATGATCTATATGTATAAGAAG
GCAGGAAAATATGAAAAAGCTCGTCATCTATTTTCTTTGATGACCGAGCGAGGAATTCCACAAAATACCGTTACTTACAACAGTTTGATGTCATT
TGAGACCAACTATAAGGGAGTCGCAAACATTTATGATCAGATGCAAAGAGCTGGTCTTCAACCTGATGTTGTTAGCTATGCACTGCTCATTAGTG
CATAT
TCCAAAGAACCTTGTTCTTGGAAGCTTGGTTAGATTTAAGCAGCTTAAGAAGTGGAACCTTGTTAGTGAGATTCTTGAATGGCTTCGAACTCAGC
ATTGGTGGGATTTTAATGAGATGGACTTTCTGATGCTTATTACAGCTTACGGGAAGCAAGGGGACTTCAGTAAAGCTGAAAGGATTTTAGGCTAC
ATGAATAAGAAGGGCTATCCTGCCAATGTGATATCACACACTGCTCTGATGGAGGCATATGGAAAAGGAGGTCAGTATGCCAAGGCAGAAGCGAT
ATTTCGGAGAATGCAAACTTCAGGCCCTGAGCCTTCTGCTATTACATACCAAATCATTCTCAAAATCTTTGTTGAGGGTGACAAGTTTAATGAAG
CTCAAGATGTCTTTGAAGCCCTTATGGATATGGATGCACCTCCTCTAAAACCAGACCAGAAAATGTTCCACATGATGATCTATATGTATAAGAAG
GCAGGAAAATATGAAAAAGCTCGTCATCTATTTTCTTTGATGACCGAGCGAGGAATTCCACAAAATACCGTTACTTACAACAGTTTGATGTCATT
TGAGACCAACTATAAGGGAGTCGCAAACATTTATGATCAGATGCAAAGAGCTGGTCTTCAACCTGATGTTGTTAGCTATGCACTGCTCATTAGTG
CATAT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E540948] | SGN-U586606 | Tomato 200607 | Build 2 | 6 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T341823 [Download][View] | Facility Assigned ID: TUS61H19_Q1 |
| Submitter: Koni | Sequencing Facility: INRA (MWG) |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.968 | Expected Error Rate: 0.0045 | Quality Trim Threshold: 14.5 |
Working
