EST details — SGN-E542722
| Search information |
| Request: 542722 | Match: SGN-E542722 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C191884 | Clone name: TUS-64-C18 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C90756 [cLEW-23-P2] | Trace: SGN-T114339 | EST: SGN-E301702 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C191884 [TUS-64-C18] | Trace: SGN-T343598 | EST: SGN-E542723 | Direction: 5' | Facility: INRA (MWG) |
| Sequence |
| Sequence Id: SGN-E542722 | Length: 852 bp (909 bp untrimmed) |
| Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E542722 [] (trimmed)
ACTTGCAAAGATGAGTAATTTAATTAAGCCAACTACATGTATTGTGATAGCTGCAGAATTTCTGGTTATTATATATCCAGAAAAACATTACACTA
AAGCAGATGCTAGGCAAAATTCATGGATATGAATAAATATCAGGAACACGAAGACACTACGACCAACAAAAGAAGCCCTTCATATCAGCAAGTAC
CTTGGAAGCCAACAACATTTTCTCTGTGTTTTCAAGCATTGGCGACCATCCCTTCATGGAAATCAGTTGGTAAGCTTCCTTCTCCGTCAGTTCCT
TCAGAATCTGCTTTTACCTCTGATTTTGGTGACCAACCATACATCTTCCTTCTGGCTTCCCTACGGGCTGCTCTTTCTTCCAACTTCACTTCCTT
AAATTGCTCTTCAAGTTTTGTTTCTTCTTCGGGTGTAAAGAAAACTACCTCCATTTTACCAAGCTCCTCGTACAACTTCTCAATCTTAGCTTTCC
AGAACAGGCCTAATTCAGTGTCCATCTCATGGTAAGGTGTCTTCAGCAGGTACTCATCAATACCACCTGCCTTGTCAATACATCGCAAGGCATGA
GTTGTAACCTTCACACGAATTTGGCGATCGAGGATGTAGCTGAAAAGCCGTTTCTCTTGCACATTAGGCTTCCAAGTCCTCCTAGACGTATTTCC
ACCTTTCTCACTGACCCGATTGCCAAACTGAATGTGACGGCCAGCGAAGAGGCCACGCTGAGCACGACCCATGACAACTTTTGCATTTGGCACGC
ATTTCTCAAGCCGTTCTTTAACTCCAGATGCCAAGTTCTTCTCTCCACCTATATTCTTCACTATCTTTTTCATCATTTCCTTGGATCTAAAC
AAGCAGATGCTAGGCAAAATTCATGGATATGAATAAATATCAGGAACACGAAGACACTACGACCAACAAAAGAAGCCCTTCATATCAGCAAGTAC
CTTGGAAGCCAACAACATTTTCTCTGTGTTTTCAAGCATTGGCGACCATCCCTTCATGGAAATCAGTTGGTAAGCTTCCTTCTCCGTCAGTTCCT
TCAGAATCTGCTTTTACCTCTGATTTTGGTGACCAACCATACATCTTCCTTCTGGCTTCCCTACGGGCTGCTCTTTCTTCCAACTTCACTTCCTT
AAATTGCTCTTCAAGTTTTGTTTCTTCTTCGGGTGTAAAGAAAACTACCTCCATTTTACCAAGCTCCTCGTACAACTTCTCAATCTTAGCTTTCC
AGAACAGGCCTAATTCAGTGTCCATCTCATGGTAAGGTGTCTTCAGCAGGTACTCATCAATACCACCTGCCTTGTCAATACATCGCAAGGCATGA
GTTGTAACCTTCACACGAATTTGGCGATCGAGGATGTAGCTGAAAAGCCGTTTCTCTTGCACATTAGGCTTCCAAGTCCTCCTAGACGTATTTCC
ACCTTTCTCACTGACCCGATTGCCAAACTGAATGTGACGGCCAGCGAAGAGGCCACGCTGAGCACGACCCATGACAACTTTTGCATTTGGCACGC
ATTTCTCAAGCCGTTCTTTAACTCCAGATGCCAAGTTCTTCTCTCCACCTATATTCTTCACTATCTTTTTCATCATTTCCTTGGATCTAAAC
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E542722] | SGN-U571231 | Tomato 200607 | Build 2 | 25 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T343597 [Download][View] | Facility Assigned ID: TUS64C18_P1 |
| Submitter: Koni | Sequencing Facility: INRA (MWG) |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.973 | Expected Error Rate: 0.0017 | Quality Trim Threshold: 20.5 |
Working
