EST details — SGN-E544561
| Search information |
| Request: 544561 | Match: SGN-E544561 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C192954 | Clone name: TUS-66-P8 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C96570 [cLEY-16-J5] | Trace: SGN-T119997 | EST: SGN-E307643 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C192954 [TUS-66-P8] | Trace: SGN-T345435 | EST: SGN-E544560 | Direction: 3' | Facility: INRA (MWG) |
| Sequence |
| Sequence Id: SGN-E544561 | Length: 781 bp (857 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E544561 [] (trimmed)
GGTCAATTTGGAAAAAGTTCACCCGTCACCACCGTCAACGCCGTTAATTCTCGCCGGCTCTTCATTCTCTAAACTCCGTCAACCCTCAATTCTTC
CCCATCTCCAAAATCCTCATAAATCCTCTCTTCTCTCTACTCCTTTGCATTTCATTCTCTCCAACATCTGATTTTTTCCGATCTCTCATCGAACT
GCTGCGATGTCGGTGAAAACTGTTAAAGTTAGCAATGTCTCCTTAGGGGCATCAGAGCGTGATATCAAGGAATTCTTTTCTTTCTCTGGTGATAT
TGAATATGTTGAGATGCAAAGTGATACTGAACGAAGTCAAATAGCATATGTTACGTTCAATGATTCTCAGGGAGCTGACACTGCAGTTCTTCTTT
CGGGTGCAACAATAGTTGATATGTCTGTTACGGTGACTTTGGATCCAGTTTACCAGCTTCCTCCTACTGCTTTTACAGCATCAGTGCCAACTGGA
AAGAAAAGTGCTGGTAATTCAGAATCCGCTTTTCAGAAAGCAGAAGACGTTGTTAGCAGCATGCTCGCAAAAGGTTATATCTTAGGTAAAGATGC
TGTAGGGAAAGCAAAGTCTTTTGATGAGAAACACCAGTTGACCTCAACTGCAACTGCTAAAGTGGCCTCTCTCGACAAAAAAATTGGTCTCACTG
AAAAGATAAGCATTGGTACTTCCATTGTTAATGACAAAGTTCGAGAGGTGGATCAGAGACTCCAAGTTTCTGATAAAGCAAAATCAGCACTTTCT
GCAGCTGAGCAAACAGTTAGT
CCCATCTCCAAAATCCTCATAAATCCTCTCTTCTCTCTACTCCTTTGCATTTCATTCTCTCCAACATCTGATTTTTTCCGATCTCTCATCGAACT
GCTGCGATGTCGGTGAAAACTGTTAAAGTTAGCAATGTCTCCTTAGGGGCATCAGAGCGTGATATCAAGGAATTCTTTTCTTTCTCTGGTGATAT
TGAATATGTTGAGATGCAAAGTGATACTGAACGAAGTCAAATAGCATATGTTACGTTCAATGATTCTCAGGGAGCTGACACTGCAGTTCTTCTTT
CGGGTGCAACAATAGTTGATATGTCTGTTACGGTGACTTTGGATCCAGTTTACCAGCTTCCTCCTACTGCTTTTACAGCATCAGTGCCAACTGGA
AAGAAAAGTGCTGGTAATTCAGAATCCGCTTTTCAGAAAGCAGAAGACGTTGTTAGCAGCATGCTCGCAAAAGGTTATATCTTAGGTAAAGATGC
TGTAGGGAAAGCAAAGTCTTTTGATGAGAAACACCAGTTGACCTCAACTGCAACTGCTAAAGTGGCCTCTCTCGACAAAAAAATTGGTCTCACTG
AAAAGATAAGCATTGGTACTTCCATTGTTAATGACAAAGTTCGAGAGGTGGATCAGAGACTCCAAGTTTCTGATAAAGCAAAATCAGCACTTTCT
GCAGCTGAGCAAACAGTTAGT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E544561] | SGN-U578292 | Tomato 200607 | Build 2 | 17 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T345436 [Download][View] | Facility Assigned ID: TUS66P08_Q1 |
| Submitter: Koni | Sequencing Facility: INRA (MWG) |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.967 | Expected Error Rate: 0.0031 | Quality Trim Threshold: 14.5 |
Working
