EST details — SGN-E548504
| Search information |
| Request: 548504 | Match: SGN-E548504 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C190978 | Clone name: TUS-61-M24 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C82768 [cLET-21-H14] | Trace: SGN-T107883 | EST: SGN-E293761 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C190978 [TUS-61-M24] | Trace: SGN-T342035 | EST: SGN-E541160 | Direction: 3' | Facility: INRA (MWG) |
| Sequence |
| Sequence Id: SGN-E548504 | Length: 805 bp (887 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E548504 [] (trimmed)
TCTTTGTGAAGTCTAAATTCTGATCAGAACCCTAATTGAAACAATCGCTAAATCTTCAAATAATCACTTTTCTCTTTCCCAATTTTGATCAATTA
CAGCTATGGCGACCAGTGGAAACAAGAATATGAACGCCAAATTGGTGCTCCTTGGGGATGTTGGAGCTGGAAAATCTAGTCTAGTTCTGCGTTTT
GTTAAAGGACAATTTATTGAATTTCAGGAATCAACCATAGGTGCTGCATTTTTCTCTCAAACAGTAGCAGTAAATGATGCAACTGTAAAATTTGA
AATATGGGATACAGCAGGCCAAGAGAGATACCACAGTCTAGCTCCAATGTATTACAGAGGTGCTGCAGCTGCTATTATTGTTTATGATATAACAA
ATCAAGCATCATTTGATAGAGCAAAAAAATGGGTTCAGGAACTTCAAGCACAAGGTAATCCGAATATGGTGATGGCACTAGCCGGAAATAAGGCA
GATTTGTTAGATGCAAGAAAAGTGGCTGCTGAGGAAGCACAAACATATGCGGAGGAGAATGGTCTGTTCTTCATGGAAACATCTGCAAAAACTGC
ATCTAATGTTAATGATGTTTTCTCTGAAATAGCAAAGAGACTGCCTCGACTTCAGCCAGCACAAAATCCATCTGGGATGGTTCTTATGGATAGGC
CTGCTCAAACACCGGCTAGTGCTTCTTGTTGCTCTTAAATCTCTGCTGGTGCTTTTCATCTCAATGTTGTTTTTGCTTAATTTGTTTGTGCTGAT
TATTAGAGTTCGTTGTGCTCATGGTCCATCACTGTACAGATTTCA
CAGCTATGGCGACCAGTGGAAACAAGAATATGAACGCCAAATTGGTGCTCCTTGGGGATGTTGGAGCTGGAAAATCTAGTCTAGTTCTGCGTTTT
GTTAAAGGACAATTTATTGAATTTCAGGAATCAACCATAGGTGCTGCATTTTTCTCTCAAACAGTAGCAGTAAATGATGCAACTGTAAAATTTGA
AATATGGGATACAGCAGGCCAAGAGAGATACCACAGTCTAGCTCCAATGTATTACAGAGGTGCTGCAGCTGCTATTATTGTTTATGATATAACAA
ATCAAGCATCATTTGATAGAGCAAAAAAATGGGTTCAGGAACTTCAAGCACAAGGTAATCCGAATATGGTGATGGCACTAGCCGGAAATAAGGCA
GATTTGTTAGATGCAAGAAAAGTGGCTGCTGAGGAAGCACAAACATATGCGGAGGAGAATGGTCTGTTCTTCATGGAAACATCTGCAAAAACTGC
ATCTAATGTTAATGATGTTTTCTCTGAAATAGCAAAGAGACTGCCTCGACTTCAGCCAGCACAAAATCCATCTGGGATGGTTCTTATGGATAGGC
CTGCTCAAACACCGGCTAGTGCTTCTTGTTGCTCTTAAATCTCTGCTGGTGCTTTTCATCTCAATGTTGTTTTTGCTTAATTTGTTTGTGCTGAT
TATTAGAGTTCGTTGTGCTCATGGTCCATCACTGTACAGATTTCA
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E548504] | SGN-U565736 | Tomato 200607 | Build 2 | 30 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T349379 [Download][View] | Facility Assigned ID: TUS61M24_Q1 |
| Submitter: Koni | Sequencing Facility: INRA (MWG) |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.968 | Expected Error Rate: 0.0018 | Quality Trim Threshold: 14.5 |
Working
