EST details — SGN-E548504
Search information |
Request: 548504 | Match: SGN-E548504 |
Request From: SGN database generated link | Match Type: EST sequence internal identifier |
Clone information |
SGN ID: SGN-C190978 | Clone name: TUS-61-M24 |
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Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing |
Clone: SGN-C82768 [cLET-21-H14] | Trace: SGN-T107883 | EST: SGN-E293761 | Direction: 5' | Facility: TIGR |
Clone: SGN-C190978 [TUS-61-M24] | Trace: SGN-T342035 | EST: SGN-E541160 | Direction: 3' | Facility: INRA (MWG) |
Sequence |
Sequence Id: SGN-E548504 | Length: 805 bp (887 bp untrimmed) |
Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E548504 [] (trimmed)
TCTTTGTGAAGTCTAAATTCTGATCAGAACCCTAATTGAAACAATCGCTAAATCTTCAAATAATCACTTTTCTCTTTCCCAATTTTGATCAATTA
CAGCTATGGCGACCAGTGGAAACAAGAATATGAACGCCAAATTGGTGCTCCTTGGGGATGTTGGAGCTGGAAAATCTAGTCTAGTTCTGCGTTTT
GTTAAAGGACAATTTATTGAATTTCAGGAATCAACCATAGGTGCTGCATTTTTCTCTCAAACAGTAGCAGTAAATGATGCAACTGTAAAATTTGA
AATATGGGATACAGCAGGCCAAGAGAGATACCACAGTCTAGCTCCAATGTATTACAGAGGTGCTGCAGCTGCTATTATTGTTTATGATATAACAA
ATCAAGCATCATTTGATAGAGCAAAAAAATGGGTTCAGGAACTTCAAGCACAAGGTAATCCGAATATGGTGATGGCACTAGCCGGAAATAAGGCA
GATTTGTTAGATGCAAGAAAAGTGGCTGCTGAGGAAGCACAAACATATGCGGAGGAGAATGGTCTGTTCTTCATGGAAACATCTGCAAAAACTGC
ATCTAATGTTAATGATGTTTTCTCTGAAATAGCAAAGAGACTGCCTCGACTTCAGCCAGCACAAAATCCATCTGGGATGGTTCTTATGGATAGGC
CTGCTCAAACACCGGCTAGTGCTTCTTGTTGCTCTTAAATCTCTGCTGGTGCTTTTCATCTCAATGTTGTTTTTGCTTAATTTGTTTGTGCTGAT
TATTAGAGTTCGTTGTGCTCATGGTCCATCACTGTACAGATTTCA
CAGCTATGGCGACCAGTGGAAACAAGAATATGAACGCCAAATTGGTGCTCCTTGGGGATGTTGGAGCTGGAAAATCTAGTCTAGTTCTGCGTTTT
GTTAAAGGACAATTTATTGAATTTCAGGAATCAACCATAGGTGCTGCATTTTTCTCTCAAACAGTAGCAGTAAATGATGCAACTGTAAAATTTGA
AATATGGGATACAGCAGGCCAAGAGAGATACCACAGTCTAGCTCCAATGTATTACAGAGGTGCTGCAGCTGCTATTATTGTTTATGATATAACAA
ATCAAGCATCATTTGATAGAGCAAAAAAATGGGTTCAGGAACTTCAAGCACAAGGTAATCCGAATATGGTGATGGCACTAGCCGGAAATAAGGCA
GATTTGTTAGATGCAAGAAAAGTGGCTGCTGAGGAAGCACAAACATATGCGGAGGAGAATGGTCTGTTCTTCATGGAAACATCTGCAAAAACTGC
ATCTAATGTTAATGATGTTTTCTCTGAAATAGCAAAGAGACTGCCTCGACTTCAGCCAGCACAAAATCCATCTGGGATGGTTCTTATGGATAGGC
CTGCTCAAACACCGGCTAGTGCTTCTTGTTGCTCTTAAATCTCTGCTGGTGCTTTTCATCTCAATGTTGTTTTTGCTTAATTTGTTTGTGCTGAT
TATTAGAGTTCGTTGTGCTCATGGTCCATCACTGTACAGATTTCA
Unigenes |
Current Unigene builds | |||||
[SGN-E548504] | SGN-U565736 | Tomato 200607 | Build 2 | 30 ESTs assembled | |
Follow SGN-U# link for detailed information and annotations |
Chromatogram |
SGN-ID: SGN-T349379 [Download][View] | Facility Assigned ID: TUS61M24_Q1 |
Submitter: Koni | Sequencing Facility: INRA (MWG) |
Quality processing |
Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
Sequence Entropy: 0.968 | Expected Error Rate: 0.0018 | Quality Trim Threshold: 14.5 |