EST details — SGN-E550391
| Search information |
| Request: 550391 | Match: SGN-E550391 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C169531 | Clone name: TUS-5-P9 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C19484 [cLED-26-O9] | Trace: SGN-T55416 | EST: SGN-E241222 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C169531 [TUS-5-P9] | Trace: SGN-T350881 | EST: SGN-E550006 | Direction: 5' | Facility: Avesthagen |
| Sequence |
| Sequence Id: SGN-E550391 | Length: 667 bp (785 bp untrimmed) |
| Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E550391 [] (trimmed)
TTGATTAAGAACTCTTATGTACAAACAGTTCACTATATTTGGTCAGCACTTACATATTGCTGTTACACTACTTATAACATCAATGCTTAACCAAA
CACTTCAAATTATATATAAGCAATATATAAAAACTATATAATTCGTTATAACGATGTTTCACTCCTTTGTCTACGCATATGTGCACCCCATGACA
TATTGTTACCAGAGTCCTTGTGTGAGTTTCTTCTTTTCAACTCCGATAGCTGAGAATGCCATCGATTCTTCCATTCACCGGTGTTCTCCATTGAC
TCATCATTTTGGCACTTTCTACGAGGAGAAAATGCAAAATGAAGTCCTTTAGACATATGTTTGTCATACATATCTCTTGATTTAGGATCCGATAA
TGTCTCATAAGCCTCTTGAACCCGAATAAACCTTTGGGTATTTTCTTCGACCCGACCCGGAGGTGAAACATCTGGGTGGTACTTTCTTGCTAATT
GTTTGTACGCTTGTTTAATTTCTAATAAAGAAACAGTTTCTTGAATACCCAAAAGCTCATAAAAGCTTTTTGATTCACTAATTTCTATCACATTG
TTGTTAAGTTTTGAGTTTACTCTAAAAGACACTTTTTGAGTTCTTGAAAATTGGGGATTTGATGGGGAAAATAGGACACGATCTATTGGGGTTCT
TA
CACTTCAAATTATATATAAGCAATATATAAAAACTATATAATTCGTTATAACGATGTTTCACTCCTTTGTCTACGCATATGTGCACCCCATGACA
TATTGTTACCAGAGTCCTTGTGTGAGTTTCTTCTTTTCAACTCCGATAGCTGAGAATGCCATCGATTCTTCCATTCACCGGTGTTCTCCATTGAC
TCATCATTTTGGCACTTTCTACGAGGAGAAAATGCAAAATGAAGTCCTTTAGACATATGTTTGTCATACATATCTCTTGATTTAGGATCCGATAA
TGTCTCATAAGCCTCTTGAACCCGAATAAACCTTTGGGTATTTTCTTCGACCCGACCCGGAGGTGAAACATCTGGGTGGTACTTTCTTGCTAATT
GTTTGTACGCTTGTTTAATTTCTAATAAAGAAACAGTTTCTTGAATACCCAAAAGCTCATAAAAGCTTTTTGATTCACTAATTTCTATCACATTG
TTGTTAAGTTTTGAGTTTACTCTAAAAGACACTTTTTGAGTTCTTGAAAATTGGGGATTTGATGGGGAAAATAGGACACGATCTATTGGGGTTCT
TA
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E550391] | SGN-U581004 | Tomato 200607 | Build 2 | 19 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T351266 [Download] [View] | Facility Assigned ID: AGT-276_H09_TUS5#3-H9.Td_078 |
| Submitter: Koni | Sequencing Facility: Avesthagen |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.953 | Expected Error Rate: 0.0042 | Quality Trim Threshold: 14.5 |
Working
