EST details — SGN-C10789

Search information 
Request: 10789Match: SGN-C10789
Request From: SGN database generated linkMatch Type: cDNA clone internal identifier
Clone information 
SGN ID: SGN-C10789Clone name: cLEC-6-E20
cartOrder Clone
Library Name: cLECOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: combined undifferentiated and shooting callus
Development Stage: 7-10 days post germination

Microarray: Alias clone SGN-C172676 is on microarray TOM1: SGN-S1-1-7.3.20.5
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C172676 [TUS-14-C10] Trace: SGN-T195211 EST: SGN-E393885 Direction: 3' Facility: INRA
Clone: SGN-C172676 [TUS-14-C10] Trace: SGN-T195363 EST: SGN-E394037 Direction: 5' Facility: INRA
Clone: SGN-C172676 [TUS-14-C10] Trace: SGN-T195655 EST: SGN-E394329 Direction: 5' Facility: INRA
Clone: SGN-C172676 [TUS-14-C10] Trace: SGN-T195655 EST: SGN-E399537 Direction: 5' Facility: INRA
Clone: SGN-C172676 [TUS-14-C10] Trace: SGN-T195777 EST: SGN-E394451 Direction: 3' Facility: INRA
Clone: SGN-C172676 [TUS-14-C10] Trace: SGN-T195777 EST: SGN-E399029 Direction: 3' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E202458Length: 600 bp (856 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E202458 [] (trimmed) GGCGGATAAAATCCATGGTCTAACTGTTCCAGCTGATGGGCCACACCATGTACAAATTTTACATGAACCAATTGGGGTTGCTGGTCAAATAATTC
CATGGAACTTTCCCCTTCTGATGATGGCCTGGAAAGTTGGGCCTGCTTTAGCGTGCGGTAACACTATTGTCCTGAAGACTGCAGAGCAAACTCCA
CTGACTGCTCTTTATGTTGCAAACTTACTCCATGAGGCTGGTCTTCCTCCAGGTGTTTTAAATATTGTTTCTGGTTTTGGACCTACCGCTGGTGC
TGCACTGGCTAGTCATATGGATGTAGACAAGCTTGCTTTCACTGGATCAACGGAAACTGGACAAACAGTTCTTCAACTGGCTGCCAAAAGCAATC
TGAAACCAGTTACCCTTGAACTAGGAGGGAAATCACCTTTCATTATATGTGAGGATGCTGACATTGATCATGCTGTTGAGCTAGCACATTTTGCA
CTCTTCTTTAATCAGGGCCAATGTTGTTGTGCTGGTTCTCGTACATATGTACATGAACGAGTATATGATGAATTTGTAGAGAAGGCAAAGGCACG
TGCAATGAGACGTGTAGTTGGCGATCCCTT
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E202458] SGN-U572014 Tomato 200607 Build 2 91 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T24119 [Download] [View] Facility Assigned ID: TCAAV34TH
Submitter: Koni Sequencing Facility: TIGR
Funding Organization: National Science Foundation
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.975 Expected Error Rate: 0.0055 Quality Trim Threshold: 14.5