EST details — SGN-C10870

Search information 
Request: 10870Match: SGN-C10870
Request From: SGN database generated linkMatch Type: cDNA clone internal identifier
Clone information 
SGN ID: SGN-C10870Clone name: cLEC-6-I12
cartOrder Clone
Library Name: cLECOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: combined undifferentiated and shooting callus
Development Stage: 7-10 days post germination

Microarray: Alias clone SGN-C184915 is on microarray TOM1: SGN-S1-1-8.1.12.17
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C184915 [TUS-46-A9] Trace: SGN-T198878 EST: SGN-E397552 Direction: 3' Facility: INRA
Clone: SGN-C184915 [TUS-46-A9] Trace: SGN-T198879 EST: SGN-E397553 Direction: 5' Facility: INRA
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Sequence 
Sequence Id: SGN-E202303Length: 589 bp (825 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E202303 [] (trimmed) GCTTTCACCATGTTGAAAAGTGTTGTCGCATGGAGAAAAGAATTCAAGATTGATGAACTCTTGGATGAGAAAGAATTAGGACAAGGACTTGAAAA
AGTTGTTTACAATCACGGAGTAGACAAAGAAGGTCACCCTGTATGTTACAATGCATTTGGTGAGTTCCAAGACAAAGAATTGTACCAAAACACTT
TTGCTGATGACAAAGAGAAACTCACCAAATTCCTCAGATGGAGAATTCAATTCATGGAGAAATCCATCAGGAATCTTGATTTTAGCCCTGATGGT
ATCAACACTTTTGTTCAAGTTCTTGATCTGAAGAATTCACCTGGACTCTTCTTTTACAAGAAAGAACTTCGCCAAGCCACCAATCGTGCCCTTCT
ATTACTCCAGGATAATTACCCTGAATTTGTTGCCAAGCAGGTGTTCATCAATGTTCCATGGTGGTACCCAGCTTACTACAGGATGATTAATGCAT
CTTTCACTACAAGGACCAAGAGCAAGTTTGTTTTTGCTGGTCCTTCAAGATCTGCTGATACTCTATTCAAATACATAGCACCTGAACAAGTACCA
GCACAATATGGTGGACTTA
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E202303] SGN-U579616 Tomato 200607 Build 2 45 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T23964 [Download] [View] Facility Assigned ID: TCAAV54TH
Submitter: Koni Sequencing Facility: TIGR
Funding Organization: National Science Foundation
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.962 Expected Error Rate: 0.0018 Quality Trim Threshold: 14.5