EST details — SGN-C10887

Search information 
Request: 10887Match: SGN-C10887
Request From: SGN database generated linkMatch Type: cDNA clone internal identifier
Clone information 
SGN ID: SGN-C10887Clone name: cLEC-6-I7
cartOrder Clone
Library Name: cLECOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: combined undifferentiated and shooting callus
Development Stage: 7-10 days post germination

Microarray: Alias clone SGN-C172747 is on microarray TOM1: SGN-S1-1-8.2.20.6
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C172747 [TUS-14-F9] Trace: SGN-T195864 EST: SGN-E394538 Direction: 3' Facility: INRA
Clone: SGN-C172747 [TUS-14-F9] Trace: SGN-T195865 EST: SGN-E394539 Direction: 5' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E202260Length: 559 bp (668 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E202260 [] (trimmed) GAGAAATCTAAATCAGTTTATTTTCTTCTTTAAGCATTGTTTCTTCGTTTTCATCGACGTGAGATTCTTCTTTGTCGGAAATGGCTGCAAACACA
ACTCCTGGCTTGCAAATACAAGCAACCAAACAATGCATTCCTGCATCGCAGAATGTTTCGAAAATGAGCACTATGAGTTTCAATTTTGGAAGTAA
AAGAAAATCTTTTACTGATTTTAGAAGTTCATCACATATCTCGCTCGCGAAGCCAATCCATAGCTTCAAATTGGCTCCTATAAAATTTGAAAGGA
TGGTTACAAAAGCAATGTCTGGAGCTAGTGAACAAGTGCCAGTTTCAGGGTTGCCTATTGATCTGAGAGGTAAGAGGGCATTTATTGCTGGCATA
GCAGATGACAATGGGTATGGATGGGCAATAGCAAAGTCTCTTGCTGCTGCAGGGGCTGAAATTCTTGTTGGTACATGGGTGCCTGCGCTCAACAT
TTTCGAGACCAGTCTGCGCCGTGGGAAATTTGACCAATCACGAGTGTTGCCTGATGGTTCATTGATGGAAATTGCAAAAGTCTA
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E202260] SGN-U575779 Tomato 200607 Build 2 43 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T23921 [Download] [View] Facility Assigned ID: TCAAU52TH
Submitter: Koni Sequencing Facility: TIGR
Funding Organization: National Science Foundation
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.961 Expected Error Rate: 0.0075 Quality Trim Threshold: 14.5