EST details — SGN-C10977

Search information 
Request: 10977Match: SGN-C10977
Request From: SGN database generated linkMatch Type: cDNA clone internal identifier
Clone information 
SGN ID: SGN-C10977Clone name: cLEC-6-M5
cartOrder Clone
Library Name: cLECOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: combined undifferentiated and shooting callus
Development Stage: 7-10 days post germination

Microarray: Alias clone SGN-C172806 is on microarray TOM1: SGN-S1-1-5.4.20.10
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C172806 [TUS-14-H20] Trace: SGN-T188018 EST: SGN-E374710 Direction: 3' Facility: INRA
Clone: SGN-C172806 [TUS-14-H20] Trace: SGN-T188019 EST: SGN-E374711 Direction: 5' Facility: INRA
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Sequence 
Sequence Id: SGN-E202272Length: 582 bp (669 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E202272 [] (trimmed) GAGCATGTTGCTTGCATGGAGAAGTATTAGTTATAATCTTAAGGCAACTCTAGGGAGTATGGTTTTGCCTCTTGGTTCTTTGACCATTGGATTGG
CTCGTCATCGTGCATTGTTATTCAAGGTTCTAGCTGATAGTGTGGGGATTCCTTGCCGATTAGTAAAAGGAAAGCAGTATACAGGTTCAGATGAT
GTTGCAATGAACTATGTAAAGATCGATGGAAGGGAGTATATTGTCGATTTGATGGCAGCCCCCGGAACACTTATTCCATCTGACACATCTGGAGT
ACATGGAGACTATGAAGAGTCTATTCTCTCCATCAGTCCATCCTCCAAAGATGTTGATTCTCATCCAGGTTCCAATAGTAGTGGGATTGCTTCTT
CATTGGGAGATCATTCAGACTATGGAACGGCAGACAAGAGATCCAGGTTTGCGGAAAGCACTAGTGCAGGAAATGAATCTCCCTCTTCTGGTAAT
CCAGAACTGCAGGAAACTTCTTCTAGAGCTGGGCATGCAAGATCTGCTTTTACACATGCAAGATCTCCTTCGTGGACAGAAGGTGTTAGCTCCCC
AGCTGCACACAA
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E202272] SGN-U583954 Tomato 200607 Build 2 3 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T23933 [Download] [View] Facility Assigned ID: TCAAU75TH
Submitter: Koni Sequencing Facility: TIGR
Funding Organization: National Science Foundation
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.972 Expected Error Rate: 0.0060 Quality Trim Threshold: 14.5