EST details — SGN-C109849
| Search information |
| Request: 109849 | Match: SGN-C109849 |
| Request From: SGN database generated link | Match Type: cDNA clone internal identifier |
| Clone information |
| SGN ID: SGN-C109849 | Clone name: cLPT-1-E15 |
| ||
| Library Name: cLPT | Organism: Solanum pennellii (formerly Lycopersicon pennellii) |
Tissue: leaf trichomes
Development Stage: 4-8 weeks old
Microarray: Alias clone SGN-C183041 is on microarray TOM1: SGN-S1-1-2.3.3.4
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C109849 [cLPT-1-E15] | Trace: SGN-T177602 | EST: SGN-E366177 | Direction: 3' | Facility: TIGR |
| Clone: SGN-C183041 [TUS-41-C7] | Trace: SGN-T191469 | EST: SGN-E390143 | Direction: 3' | Facility: INRA |
| Clone: SGN-C183041 [TUS-41-C7] | Trace: SGN-T197471 | EST: SGN-E396145 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E366176 | Length: 469 bp (937 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E366176 [] (trimmed)
GTTAGTTACAAAGTAGTATAAAGGGAAAGCAAAAGCTAAAGGAAGCTCATTGAGAAATGTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCC
CCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTTCTTCTATTCCAAGTCT
CATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGAGAGAAGAAATGGCAAAAGAATCCTACGATCAGGCCGTTG
CTGCACTCGAGAAACTCCTCAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGAT
GGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGATACAAACCCAGCCTTATA
CCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCTTGGCAACTCTTCTTCTTCTTCTTCTTCTTCTATTCCAAGTCT
CATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGTGAGAGAAGAAATGGCAAAAGAATCCTACGATCAGGCCGTTG
CTGCACTCGAGAAACTCCTCAGCGAGAAAGCAGAACTTGGACCAGTTGCTGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGAT
GGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTTTATTCATTTCAAGACTGAGAAATATGATACAAACCCAGCCTTATA
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E366176] | SGN-U578484 | Tomato 200607 | Build 2 | 220 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T177601 [Download] [View] | Facility Assigned ID: TPTAA32TH |
| Submitter: Koni | Sequencing Facility: TIGR |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.971 | Expected Error Rate: 0.0029 | Quality Trim Threshold: 14.5 |
Working
