EST details — SGN-C11010

Search information 
Request: 11010Match: SGN-C11010
Request From: SGN database generated linkMatch Type: cDNA clone internal identifier
Clone information 
SGN ID: SGN-C11010Clone name: cLEC-6-O16
cartOrder Clone
Library Name: cLECOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: combined undifferentiated and shooting callus
Development Stage: 7-10 days post germination

Microarray: Alias clone SGN-C172828 is on microarray TOM1: SGN-S1-1-7.1.20.11
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C172828 [TUS-14-I18] Trace: SGN-T195241 EST: SGN-E393915 Direction: 3' Facility: INRA
Clone: SGN-C172828 [TUS-14-I18] Trace: SGN-T195391 EST: SGN-E394065 Direction: 3' Facility: INRA
Clone: SGN-C172828 [TUS-14-I18] Trace: SGN-T195391 EST: SGN-E399069 Direction: 3' Facility: INRA
Clone: SGN-C172828 [TUS-14-I18] Trace: SGN-T199601 EST: SGN-E398275 Direction: 5' Facility: INRA
Clone: SGN-C172828 [TUS-14-I18] Trace: SGN-T200215 EST: SGN-E399070 Direction: 5' Facility: INRA
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Sequence 
Sequence Id: SGN-E202319Length: 609 bp (872 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E202319 [] (trimmed) AAAATCTCCTTTTTGCTATCTCTTTTCTCTATATATGGCTTTTGAATTCATGAAAATCACGTTCTCAAGCTCACGTCAACTTCGAAAATTCTTTA
TATCACTATAATCCACAACCAAAGACTTTTAAGCCTCATATAATCACAACCACAACCTATCTTGTATGAGATAAATTTCAAGTGCTATAAATATA
CCTAACGAAAAGTTATAGTTAGCAGTACTGAAAAAAACGAGATAAACATGAGTAATTGTTTGCAAAGCTGGCCGGAGCCAATTGTCCGAGTTCAA
GGACTCTCGGAAAGTGGCATTCGAGAAATCCCTGACCGGTACGTGAAACGACCATCGGATCGTCCATGTTTCAAGGAGACAACAACGTTGTCGTC
ATCATCACACCTTGAGAATATTCCGTTAATTGACCTTGAAAACTTGAATTCATCGGATGAATCCATTCGCGATGAGACAATGGAACTCATTTCCA
AGGCTTGTCGCGAATGGGGTTTCTTCCAAGTGGTGAACCACGGCGTTAGCCATGAACTTATGGCTAACGCACGTAGCGTCTGGCGGGAGTTCTTT
CATCTCCCGCCAGAGGAAAAACAAAAGTTTGCGAATTCA
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E202319] SGN-U564996 Tomato 200607 Build 2 11 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T23980 [Download] [View] Facility Assigned ID: TCAAV92TH
Submitter: Koni Sequencing Facility: TIGR
Funding Organization: National Science Foundation
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.980 Expected Error Rate: 0.0054 Quality Trim Threshold: 14.5