EST details — SGN-C11020

Search information 
Request: 11020Match: SGN-C11020
Request From: SGN database generated linkMatch Type: cDNA clone internal identifier
Clone information 
SGN ID: SGN-C11020Clone name: cLEC-6-O6
cartOrder Clone
Library Name: cLECOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: combined undifferentiated and shooting callus
Development Stage: 7-10 days post germination

Microarray: Alias clone SGN-C172836 is on microarray TOM1: SGN-S1-1-7.2.20.3
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C172836 [TUS-14-J2] Trace: SGN-T188097 EST: SGN-E374789 Direction: 3' Facility: INRA
Clone: SGN-C172836 [TUS-14-J2] Trace: SGN-T188098 EST: SGN-E374790 Direction: 5' Facility: INRA
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Sequence 
Sequence Id: SGN-E202489Length: 627 bp (818 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E202489 [] (trimmed) TGAGTGTTAAGTATTTTCAAAATTGAAACAACCCTGCCGTACTTGAAAGAAACACTCTCCAACTCTATGGATATTAATACCGCCGGCGCCGGTGC
CGGCGATGTTACTCCATCCGGTGCTTTTTGCCAATGGACTTCATCTGCTTCTCTCTCGTTCCAGCACTTTTTGGATAAAACGACGCCATATTTAC
TATACCGATGGATTGCGTTTTTCTTCATCGCTGTCCTGTATGTCGTGCGAGTGTATCTGGTGGAAGGATTCTACGTTATCTCGTATGCCCTGGGA
ATCTATCTTCTTAACCTCCTCATCGGTTTCCTCTCGCCGCAAGTTGACCCGGAGTTACAGGATTTATCTGATGGCCCGACTCTGCCGACCCGAGA
AACCGACGAATTCCGCCCTTTCGTTCGTCGCCTTCCTGAATTCAGATTCTGGTACTCAATTACCAAGGCGTTCTGCATTGCATTTGTGTTAACAT
TTTTCAGTGTATTGGATGTGCCTGTATTTGGGCCGATTCTCGATTTCTATTGGGTTGTGCTGTTCACACTTACAATGAGAAGACAAATTCGACAC
ATGTCGAAATATAAATATCTGCCATTCTCTTTTGGGAAGCAGCGGTATGATGGAAAG
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E202489] SGN-U585232 Tomato 200607 Build 2 17 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T24150 [Download] [View] Facility Assigned ID: TCAAV87TH
Submitter: Koni Sequencing Facility: TIGR
Funding Organization: National Science Foundation
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.984 Expected Error Rate: 0.0141 Quality Trim Threshold: 14.5