Notice: The SGN server will be upgraded later today. SGN may be intermittently unavailable during the upgrade. We apologize for any inconvenience.

EST details — SGN-C1581

Search information 
Request: 1581Match: SGN-C1581
Request From: SGN database generated linkMatch Type: cDNA clone internal identifier
Clone information 
SGN ID: SGN-C1581Clone name: cLEC-13-E1
cartOrder Clone
Library Name: cLECOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: combined undifferentiated and shooting callus
Development Stage: 7-10 days post germination

Microarray: Alias clone SGN-C173099 is on microarray TOM1: SGN-S1-1-8.1.20.14
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C173099 [TUS-15-E1] Trace: SGN-T188561 EST: SGN-E374917 Direction: 3' Facility: INRA
Clone: SGN-C173099 [TUS-15-E1] Trace: SGN-T188562 EST: SGN-E374918 Direction: 5' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E204145Length: 511 bp (870 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E204145 [] (trimmed) ATAATATTTACCTACGATAAATATGTCGATGGATTTAATATTATCATCGAAAAAGGCCGATAAAACGATAGTGGAAGTTGAAGGAGTTGGCGGAT
ACTACACATGGTCAAGTAGCCAATTTCCCACTCTAAGTCAGAAAAAAGTTGCAGCTGGATTATTAATTCTTCAGCCTCGTGGCTTAGCTTTACCT
CACTATGCTGATACCTGTAAAATTGCTTATGTTTGTGAAGGCACGTATATGGAGAATTATCATGTGGGAAAAACTAAATTTGGGAAGCAGCGTCT
GCATCAATTTTAGAGGCCTCTCTAAATACGACTCCAGATTTGACAAAGTCTTTCAAGTCCAAGATTGCTAAGGGTTCAGTGATTGCCCCACCTTC
CAATGGTTAAGTAATTAATTACTTGTTTGAAATAAGATTGATCGATGATCAATAGGAGTATATGGGAGCTTTTGACGTTAAGCCTATATGCTGCT
GTGTGTCAATTATATATGTATGCTTGTGTCATTAAG
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E204145] SGN-U584925 Tomato 200607 Build 2 34 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T25898 [Download] [View] Facility Assigned ID: TCABW25TH
Submitter: Koni Sequencing Facility: TIGR
Funding Organization: National Science Foundation
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.965 Expected Error Rate: 0.0198 Quality Trim Threshold: 14.5