EST details — SGN-C2039

Search information 
Request: 2039Match: SGN-C2039
Request From: SGN database generated linkMatch Type: cDNA clone internal identifier
Clone information 
SGN ID: SGN-C2039Clone name: cLEC-14-K15
cartOrder Clone
Library Name: cLECOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: combined undifferentiated and shooting callus
Development Stage: 7-10 days post germination

Microarray: Alias clone SGN-C173310 is on microarray TOM1: SGN-S1-1-5.1.19.3
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C173310 [TUS-15-M20] Trace: SGN-T188676 EST: SGN-E375822 Direction: 3' Facility: INRA
Clone: SGN-C173310 [TUS-15-M20] Trace: SGN-T188677 EST: SGN-E375823 Direction: 5' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E204610Length: 651 bp (875 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E204610 [] (trimmed) AAAAAAAAAAAAACTCAAAGTAAAAAAAATGGCGGAAATGAATGGAAATTCAGAAACTCAATTCCAAATTCCGAAAATTAAGTTCACAAAGCTGT
TCATCAATGGTGAATTCGTCGATTCCGTTTCAGGAAATACGTTTGAAACAATAGATCCACGAAACGAGGAGGTTATCGCAAGAATTAGTGAAGGC
GACAAGGAGGATATTGATTTGGCTGTCAAAGCCGCCCGTGAAGCTTTCGATAATGGGCCTTGGCCTCGATTATCCGCCGCGGAGAGGAGAAGGAT
AATGCTGAAATTCGCGGATTTAATCATAGAAAATGCAGAGGAAATAGCGGCATTGGATGCAATGGATGCAGGGAAGTTATTTGTTCCTGTAAAGA
ACATGGACATTCCAGCTGCAGCCGAAATTATTCGCTATTATGCTGGTGCAGCCGATAAAATCCATGGAACGACTCTCAAAATGTCGCGTGAGATG
CAAGGATACACGTTGCTCGAACCAATTGGTGTTGTCGGACACATTATTCCTTGGAATTTCCCAACTCAGATGTTTCTTATGAAGGTTGGCCCTGC
ATTAGCAGCTGGTTGCACTATGATTGTCAAACCTGCTGAACAAACTCCTCTTTCCGCGCTCTATTATGCTCAATTGGCTAA
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E204610] SGN-U572156 Tomato 200607 Build 2 14 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T26226 [Download] [View] Facility Assigned ID: TCACA68TH
Submitter: Koni Sequencing Facility: TIGR
Funding Organization: National Science Foundation
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.962 Expected Error Rate: 0.0041 Quality Trim Threshold: 14.5