EST details — SGN-C24169

Search information 
Request: 24169Match: SGN-C24169
Request From: SGN database generated linkMatch Type: cDNA clone internal identifier
Clone information 
SGN ID: SGN-C24169Clone name: cLED-7-G21
cartOrder Clone
Library Name: cLEDOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: ovary
Development Stage: 5 days pre-anthesis to 5 days post-anthesis

Microarray: Alias clone SGN-C175247 is on microarray TOM1: SGN-S1-1-4.2.13.5
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C175247 [TUS-20-N13] Trace: SGN-T1356 EST: SGN-E378672 Direction: 5' Facility: Giov. Lab
Clone: SGN-C175247 [TUS-20-N13] Trace: SGN-T190005 EST: SGN-E377506 Direction: 3' Facility: INRA
Clone: SGN-C175247 [TUS-20-N13] Trace: SGN-T190006 EST: SGN-E377507 Direction: 5' Facility: INRA
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Sequence 
Sequence Id: SGN-E231806Length: 579 bp (788 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E231806 [] (trimmed) CAGCTATACCACCCACCCATGCACCCACCCACCTATCTAAACCATATTTTTTCCCTTTAATCTAATGGAGCTTCTCTTAGTATTCTCCCAATGTC
CACCATTCCCTCCGCCGCCTACGGCGGTCCACCACCACCTATAACCACCACCAATACGCTCATCGAGAGCCTCAACAAAATACGCCTCGGCTACG
CAATTGCAATTGCCCTTGCCTTCCTCTTCCTCCTATCAACTCTCATCCTTTCATCTTACCTATGCTGCCGCTCCGCTGCCTATCGCCGCCGTCAA
GCCCAATCCCAGTCTCGAAACCCCGAACACCGGAATTTACATTCCGAGTGTAATTTTCGTTGCTGAGGAAGACGAAAACGACGACGTTTCATCTC
AGAACACTTTCGCGGGCCTCAATCAAGCAGTAATCAACTCTTACCCTAAATTAATTTACTCAAGCAGAAACGGAAATTGGGGAAACGGAAACGGA
AGCAGAAACGACGTCGTGTGTGCGATTTGTTTGTGCGATTACAAGGAAGCGGAGATGTTACGGATGTTACCTGAGTGTAAGCATTATTTTCATGT
GATGTGCGT
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E231806] SGN-U582064 Tomato 200607 Build 2 7 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T50315 [Download] [View] Facility Assigned ID: TOVAY47TH
Submitter: Koni Sequencing Facility: TIGR
Funding Organization: National Science Foundation
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.982 Expected Error Rate: 0.0162 Quality Trim Threshold: 14.5