Notice: The SGN server will be upgraded later today. SGN may be intermittently unavailable during the upgrade. We apologize for any inconvenience.

EST details — SGN-C2561

Search information 
Request: 2561Match: SGN-C2561
Request From: SGN database generated linkMatch Type: cDNA clone internal identifier
Clone information 
SGN ID: SGN-C2561Clone name: cLEC-16-G8
cartOrder Clone
Library Name: cLECOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: combined undifferentiated and shooting callus
Development Stage: 7-10 days post germination

Microarray: Alias clone SGN-C173432 is on microarray TOM1: SGN-S1-1-3.2.18.15
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C173432 [TUS-16-B22] Trace: SGN-T196888 EST: SGN-E395562 Direction: 5' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E204971Length: 563 bp (948 bp untrimmed)
Status: Current VersionDirection: 5'
>SGN-E204971 [] (trimmed) GGATGGGGACTTGAGGTCTCAGAGCTTGAGAATCAGCTGAAAACTGCAAAATCTAAGGGTATTAACGTTAGGGCTTTGGCTGTGATCAATCCAGG
CAACCCAACTGGGCAGGTTCTCGCTGAGGCTAACCAACGAGAAATTGTGGAATTCTGCAAGAAAGAAGGCCTTGTTCTTCTGGCGGATGAAGTGT
ATCAGGAAAATGTTTATGTGCCTAAGAAGCAGTTCCACTCATTTAAGAAAGTTGCCCGCTCTATGGGATTTGGAGAAAAGGACATCTCTTTAGTT
TCTTTTCAGTCTGTGTCTAAAGGATTCTATGGAGAGTGTGGAAAGCGAGGAGGTTACATGGAGGTTACTGGATTTAGCCCTGAGATAAGAGAACA
GATATACAAAGTGGCATCTGTCAATCTGTGTTCCAACATTTCTGGTCAGATTCTTGCGAGCCTTGTCATGAGCCCTCCGAAGGTGGGTGATGAAT
CATACGAGTCTTTTGCTGCTGAGAAAGAAGGGATACTTTCATCCTTGGCAAGACGTGCAAAGACACTAGAAGATGCATTCAGTAATTT
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E204971] SGN-U580998 Tomato 200607 Build 2 69 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T26860 [Download] [View] Facility Assigned ID: TCACJ40TH
Submitter: Koni Sequencing Facility: TIGR
Funding Organization: National Science Foundation
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.967 Expected Error Rate: 0.0060 Quality Trim Threshold: 14.5