EST details — SGN-C26545
| Search information |
| Request: 26545 | Match: SGN-C26545 |
| Request From: SGN database generated link | Match Type: cDNA clone internal identifier |
| Clone information |
| SGN ID: SGN-C26545 | Clone name: cLEF-40-M13 |
| ||
| Library Name: cLEF | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: fruit pericarp
Development Stage: mature green
Microarray: Alias clone SGN-C180451 is on microarray TOM1: SGN-S1-1-8.3.19.9
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C180451 [TUS-34-G9] | Trace: SGN-T193482 | EST: SGN-E392156 | Direction: 5' | Facility: INRA |
| Clone: SGN-C180451 [TUS-34-G9] | Trace: SGN-T199167 | EST: SGN-E397841 | Direction: 3' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E246098 | Length: 584 bp (867 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E246098 [] (trimmed)
AAATCAACAAATATTGCATTAATACAAGTTTAAATAGTCACATGGCTAATAAAGTTTTGACATAAATGGCCTGGTACAAATTTATTTTTTGGTTC
TTTAACTTACTGATCACAATGTTTACTGATCTTTAACTTACTTTTACTGGCATATTATTAACCACTTCCCAACTAGAATATTCCAACCAACTCCC
ACTCCTACGCGCCACCGTCAACAGTGGCCTTGTCGCCGGTTGAAACGTCGGCTCTCATTTTAAGCCACTCAACGACATTTCCGAACACTTGCTCC
ACATTCTCCTCCAGTTCTCCAACCAGCTGGTGCCACATACCTGGATATATCTTCAGTGTTTTGTCCTTGCTTGTCGATCGGCGATATAGCTCCTC
CGCGCACGCGGGATCGCAGATGACATCATCGCTGCCGTGGACGATCAGAAATGGTACTTTCACTTCTTCGAATCTCCCTTGCAGCTCCCTACATA
CTCTCATTAACTCACGCGCCGTCGCGGGGCGTGGTTTTATAAGTGGTCTCCTTGGACTTGCTATTGCCAATTTCCTCTTCCACTCCTCCTTGAAT
GCAACCAAAGGCAA
TTTAACTTACTGATCACAATGTTTACTGATCTTTAACTTACTTTTACTGGCATATTATTAACCACTTCCCAACTAGAATATTCCAACCAACTCCC
ACTCCTACGCGCCACCGTCAACAGTGGCCTTGTCGCCGGTTGAAACGTCGGCTCTCATTTTAAGCCACTCAACGACATTTCCGAACACTTGCTCC
ACATTCTCCTCCAGTTCTCCAACCAGCTGGTGCCACATACCTGGATATATCTTCAGTGTTTTGTCCTTGCTTGTCGATCGGCGATATAGCTCCTC
CGCGCACGCGGGATCGCAGATGACATCATCGCTGCCGTGGACGATCAGAAATGGTACTTTCACTTCTTCGAATCTCCCTTGCAGCTCCCTACATA
CTCTCATTAACTCACGCGCCGTCGCGGGGCGTGGTTTTATAAGTGGTCTCCTTGGACTTGCTATTGCCAATTTCCTCTTCCACTCCTCCTTGAAT
GCAACCAAAGGCAA
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E246098] | SGN-U566786 | Tomato 200607 | Build 2 | 49 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T59950 [Download] [View] | Facility Assigned ID: TMGGA79TH |
| Submitter: Koni | Sequencing Facility: TIGR |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.963 | Expected Error Rate: 0.0132 | Quality Trim Threshold: 20.5 |
Working
