EST details — SGN-C26548
| Search information |
| Request: 26548 | Match: SGN-C26548 |
| Request From: SGN database generated link | Match Type: cDNA clone internal identifier |
| Clone information |
| SGN ID: SGN-C26548 | Clone name: cLEF-40-M16 |
| ||
| Library Name: cLEF | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: fruit pericarp
Development Stage: mature green
Microarray: Alias clone SGN-C176351 is on microarray TOM1: SGN-S1-1-4.4.10.1
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C176351 [TUS-23-L13] | Trace: SGN-T181380 | EST: SGN-E368453 | Direction: 3' | Facility: INRA |
| Clone: SGN-C176351 [TUS-23-L13] | Trace: SGN-T181381 | EST: SGN-E368454 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E246282 | Length: 616 bp (927 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E246282 [] (trimmed)
GAGTTTTAAATTCTTTGAACAAAGAAAAAAAGAGCTAATCACTTTTTGTATTAAAGTTTGCTGGAGATTTGTATTTAATTTGTCGACAAGACAGG
AAAAATTCTGGGGTGTTAAGTTTTTCTTGATCGTTTTTTGGTGGTATTGAAGTTATGGAAGACAAAAGCAATGATTATTATGCAGTTTTGGGGTT
GAAGAAGGAATGCACTGACACAGAACTTAGGAATGCCTATAAGAAGCTTGCACTGAAATGGCACCCAGATCGCTGTTCAGCATCGGGGAATTTGA
AGTTTGTAGATGAAGCAGAAGAAGCAATTTCAGGCAATTCAAGAAGCATATTCTGTGTTATCGGATGCAAACAAAAAGTTTTTGTACGATGTAGG
AGTTTATGACTCTGGTGATGATGACGACGAAAATGGCATGGGTGATTTCCTGAATGAAATGGCAGCTATGATGAGCCAAAATAAGTCCAATGAAA
ATCAGGGAGAAGAAACCTTTGAGGAATTGCAGGATATGTTTAATGAAATGTTCAACAGTGATAATGGAACGTTNTCTTCTTCTTCTTCTTCTTCT
TCTTCTTCTTGGACTGGAACTCCTTCAATGTGCTCTACTACATCAT
AAAAATTCTGGGGTGTTAAGTTTTTCTTGATCGTTTTTTGGTGGTATTGAAGTTATGGAAGACAAAAGCAATGATTATTATGCAGTTTTGGGGTT
GAAGAAGGAATGCACTGACACAGAACTTAGGAATGCCTATAAGAAGCTTGCACTGAAATGGCACCCAGATCGCTGTTCAGCATCGGGGAATTTGA
AGTTTGTAGATGAAGCAGAAGAAGCAATTTCAGGCAATTCAAGAAGCATATTCTGTGTTATCGGATGCAAACAAAAAGTTTTTGTACGATGTAGG
AGTTTATGACTCTGGTGATGATGACGACGAAAATGGCATGGGTGATTTCCTGAATGAAATGGCAGCTATGATGAGCCAAAATAAGTCCAATGAAA
ATCAGGGAGAAGAAACCTTTGAGGAATTGCAGGATATGTTTAATGAAATGTTCAACAGTGATAATGGAACGTTNTCTTCTTCTTCTTCTTCTTCT
TCTTCTTCTTGGACTGGAACTCCTTCAATGTGCTCTACTACATCAT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E246282] | SGN-U572726 | Tomato 200607 | Build 2 | 35 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T60134 [Download] [View] | Facility Assigned ID: TMGGB80TH |
| Submitter: Koni | Sequencing Facility: TIGR |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.947 | Expected Error Rate: 0.0113 | Quality Trim Threshold: 14.5 |
Working
