EST details — SGN-C26681
| Search information |
| Request: 26681 | Match: SGN-C26681 |
| Request From: SGN database generated link | Match Type: cDNA clone internal identifier |
| Clone information |
| SGN ID: SGN-C26681 | Clone name: cLEF-41-E12 |
| ||
| Library Name: cLEF | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: fruit pericarp
Development Stage: mature green
Microarray: Alias clone SGN-C176409 is on microarray TOM1: SGN-S1-1-2.2.10.6
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C176409 [TUS-23-N23] | Trace: SGN-T1404 | EST: SGN-E378167 | Direction: 5' | Facility: Giov. Lab |
| Clone: SGN-C176409 [TUS-23-N23] | Trace: SGN-T181328 | EST: SGN-E368401 | Direction: 3' | Facility: INRA |
| Clone: SGN-C176409 [TUS-23-N23] | Trace: SGN-T181329 | EST: SGN-E368402 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E246848 | Length: 583 bp (1021 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E246848 [] (trimmed)
GTGTGTACGGTTTTCAATTGACGAAGTGTATGTTTAGTCATCAACACTTTGTATGAATTGATTTTTTTATTGATTCGTGGAATCTTCCAGAAAGA
TGTCGAGCGTTTGCAGTGATAAGTCGTCGTCGACGCCGGCGGTAACCGGCGGCGGTTTTGGAGGAGAAATCATGTTGTTTGGTGTGAGAGTAAAA
GTGGATCCTATGAGGAAGAGCGTGAGTCTGAACGATCTTTCACAGTACGAGCAACCGAATGCTAACAACAACAACAACAACGGCGGCGGTGATAA
CAATGAATCCTCTAAAGTGGCGCAGGATGAAGGTTATGCCTCTGCAGATGACGCGGTTCAACATCAGTCCAACAGTGGTCGCGAGCGTAAGAGAG
GAGTTCCGTGGACAGAGGAAGAGCATAAGTTATTCCTTTTAGGATTGCAAAAAGTTGGAAAAGGAGACTGGAGAGGAATCTCTCGTAACTTCGTA
AAGACTCGCACACCGACACAGGTTGCAAGTCATGCTCAGAAATACTTCCTCCGGCGAAGCAACCTCAACCGTCGCCGCCGTCGATCTAGCCTCTT
TGATATCACCACT
TGTCGAGCGTTTGCAGTGATAAGTCGTCGTCGACGCCGGCGGTAACCGGCGGCGGTTTTGGAGGAGAAATCATGTTGTTTGGTGTGAGAGTAAAA
GTGGATCCTATGAGGAAGAGCGTGAGTCTGAACGATCTTTCACAGTACGAGCAACCGAATGCTAACAACAACAACAACAACGGCGGCGGTGATAA
CAATGAATCCTCTAAAGTGGCGCAGGATGAAGGTTATGCCTCTGCAGATGACGCGGTTCAACATCAGTCCAACAGTGGTCGCGAGCGTAAGAGAG
GAGTTCCGTGGACAGAGGAAGAGCATAAGTTATTCCTTTTAGGATTGCAAAAAGTTGGAAAAGGAGACTGGAGAGGAATCTCTCGTAACTTCGTA
AAGACTCGCACACCGACACAGGTTGCAAGTCATGCTCAGAAATACTTCCTCCGGCGAAGCAACCTCAACCGTCGCCGCCGTCGATCTAGCCTCTT
TGATATCACCACT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E246848] | SGN-U578198 | Tomato 200607 | Build 2 | 42 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T60263 [Download] [View] | Facility Assigned ID: TMGGF30TH |
| Submitter: Koni | Sequencing Facility: TIGR |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.986 | Expected Error Rate: 0.0115 | Quality Trim Threshold: 14.5 |
Working
