EST details — SGN-C27127
| Search information |
| Request: 27127 | Match: SGN-C27127 |
| Request From: SGN database generated link | Match Type: cDNA clone internal identifier |
| Clone information |
| SGN ID: SGN-C27127 | Clone name: cLEF-42-K1 |
| ||
| Library Name: cLEF | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: fruit pericarp
Development Stage: mature green
Microarray: Alias clone SGN-C176621 is on microarray TOM1: SGN-S1-1-6.3.9.19
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C176621 [TUS-24-G19] | Trace: SGN-T192959 | EST: SGN-E391633 | Direction: 3' | Facility: INRA |
| Clone: SGN-C176621 [TUS-24-G19] | Trace: SGN-T192960 | EST: SGN-E391634 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E247678 | Length: 517 bp (954 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E247678 [] (trimmed)
AATGGCTCTCTGCCTCTCAGCTTCAAAATCCATTGCTTTCAACATAAGATGCAGCAATTCTACAAGTGATCCTCTTCCGTCTTCCTCTGTTTTCA
AATCCCTCAGAATTCCCCGTTTCTGGCCATGGCAAAAGGTAAAGATGGGACCTTTGACAGTATCTCCAATGGGGTTTGGTACTTGGGCATGGGGC
AATCAGCTTCTCTGGGGATATCAAGATTCCATGGACTCTGAACTTCAGCAGACTTTCAATCTTGCTGTGGAGAATGGGATTAACCTATTTGATAC
AGCTGATTCTTATGGGACTGGAAAGTTAAATGGACAAAGTGAGAAACTTCTTGGAAAATTCATTCGCGAGTTTCCAGGAGACAAGCAAGTAAAGA
ATGACATCGTTATTGCAACAAAATTTGCAGCATACCCATGGCGCCTAACACCTGGACAATTTGTGAATGCTTGCAAGTCTTCTCTGGAAAGAATG
GAAATCGAGCAAATTGGAATTGGACAATTGCATTGGTCAACT
AATCCCTCAGAATTCCCCGTTTCTGGCCATGGCAAAAGGTAAAGATGGGACCTTTGACAGTATCTCCAATGGGGTTTGGTACTTGGGCATGGGGC
AATCAGCTTCTCTGGGGATATCAAGATTCCATGGACTCTGAACTTCAGCAGACTTTCAATCTTGCTGTGGAGAATGGGATTAACCTATTTGATAC
AGCTGATTCTTATGGGACTGGAAAGTTAAATGGACAAAGTGAGAAACTTCTTGGAAAATTCATTCGCGAGTTTCCAGGAGACAAGCAAGTAAAGA
ATGACATCGTTATTGCAACAAAATTTGCAGCATACCCATGGCGCCTAACACCTGGACAATTTGTGAATGCTTGCAAGTCTTCTCTGGAAAGAATG
GAAATCGAGCAAATTGGAATTGGACAATTGCATTGGTCAACT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E247678] | SGN-U576762 | Tomato 200607 | Build 2 | 6 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T60722 [Download] [View] | Facility Assigned ID: TMGGI61TH |
| Submitter: Koni | Sequencing Facility: TIGR |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.963 | Expected Error Rate: 0.0073 | Quality Trim Threshold: 14.5 |
Working
