EST details — SGN-C27184
| Search information |
| Request: 27184 | Match: SGN-C27184 |
| Request From: SGN database generated link | Match Type: cDNA clone internal identifier |
| Clone information |
| SGN ID: SGN-C27184 | Clone name: cLEF-42-M4 |
| ||
| Library Name: cLEF | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: fruit pericarp
Development Stage: mature green
Microarray: Alias clone SGN-C176647 is on microarray TOM1: SGN-S1-1-4.4.9.19
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C176647 [TUS-24-H21] | Trace: SGN-T193383 | EST: SGN-E392057 | Direction: 3' | Facility: INRA |
| Clone: SGN-C176647 [TUS-24-H21] | Trace: SGN-T197854 | EST: SGN-E396528 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E247550 | Length: 495 bp (1010 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E247550 [] (trimmed)
AAAGAGAATGAAGACGGATATTATAGATATCGCCACACATGTTTAAAGTACAGAACATTTACAAGCATATATATGTTTGATGAAATTTTCTACTT
TACAGTAATCTTATTCCACAACATATGTATAAGAATAGTAATTATAATATGTTAATCTTATGATAATTTGATGCAACACATATATATAAAGATGA
TCTTATATTTGATTTGAAACCCTGTAGTAATTTGTCAAAGTCTTCCCATCCAACTCCTTTGAAAAGAACCTCCCCATGTAATCCGTGTACATGAA
TTCGCGGTAAACTGCTGGCTTTTCATCTGATATCAGTTCAGGCAGAGGTCCAAATGAGTTCTCTCTTTGTCCTGGATTAAAGAAGATGGCAACTG
ATACGCGGGGTTCTTGGAAAGGGTTGGCTAGAACTCGGTGCACCACGCTCTTGTATTCATCATTCGATATTATCTGAAGAATATCACCAATATTA
ATCACAATAGCCCCCGGAAT
TACAGTAATCTTATTCCACAACATATGTATAAGAATAGTAATTATAATATGTTAATCTTATGATAATTTGATGCAACACATATATATAAAGATGA
TCTTATATTTGATTTGAAACCCTGTAGTAATTTGTCAAAGTCTTCCCATCCAACTCCTTTGAAAAGAACCTCCCCATGTAATCCGTGTACATGAA
TTCGCGGTAAACTGCTGGCTTTTCATCTGATATCAGTTCAGGCAGAGGTCCAAATGAGTTCTCTCTTTGTCCTGGATTAAAGAAGATGGCAACTG
ATACGCGGGGTTCTTGGAAAGGGTTGGCTAGAACTCGGTGCACCACGCTCTTGTATTCATCATTCGATATTATCTGAAGAATATCACCAATATTA
ATCACAATAGCCCCCGGAAT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E247550] | SGN-U570114 | Tomato 200607 | Build 2 | 22 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T60594 [Download] [View] | Facility Assigned ID: TMGGJ74TH |
| Submitter: Koni | Sequencing Facility: TIGR |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.956 | Expected Error Rate: 0.0089 | Quality Trim Threshold: 14.5 |
Working
