EST details — SGN-C28046
Search information |
Request: 28046 | Match: SGN-C28046 |
Request From: SGN database generated link | Match Type: cDNA clone internal identifier |
Clone information |
SGN ID: SGN-C28046 | Clone name: cLEF-46-G17 |
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Library Name: cLEF | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: fruit pericarp
Development Stage: mature green
Microarray: Alias clone SGN-C176865 is on microarray TOM1: SGN-S1-1-2.1.8.9
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing |
Clone: SGN-C176865 [TUS-25-A23] | Trace: SGN-T181560 | EST: SGN-E369698 | Direction: 3' | Facility: INRA |
Clone: SGN-C176865 [TUS-25-A23] | Trace: SGN-T181561 | EST: SGN-E369699 | Direction: 5' | Facility: INRA |
Sequence |
Sequence Id: SGN-E247118 | Length: 326 bp (424 bp untrimmed) |
Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E247118 [] (trimmed)
AAGACATTGGTGCAAATCAGGGGAAGTACTATGCCCTAAATGTCCCATTGCATGATGGGATGGATGACGATAGTTTTGGTAGACTATTTCGTCCC
ACAATACAAAAAGTCATGGAGGTCTACCAACCTGAGGCTGTTGTTCTTCAATGTGGGGCTGATTCACTGGCTGGAGACAGGTTGGGTTGCTTCAA
CTTGTCTGTCAAGGGCCATGCCGCTTGCCTTATGTACCTCAGATCCTTCAATGTCCCTCTGATGGTATTGGGTGGTGGAGGTTATACTATAAGAA
ATGTCGCTAGGTGCTGGTGCTATGAGACAGCAGTTGCAGTT
ACAATACAAAAAGTCATGGAGGTCTACCAACCTGAGGCTGTTGTTCTTCAATGTGGGGCTGATTCACTGGCTGGAGACAGGTTGGGTTGCTTCAA
CTTGTCTGTCAAGGGCCATGCCGCTTGCCTTATGTACCTCAGATCCTTCAATGTCCCTCTGATGGTATTGGGTGGTGGAGGTTATACTATAAGAA
ATGTCGCTAGGTGCTGGTGCTATGAGACAGCAGTTGCAGTT
Unigenes |
Current Unigene builds | |||||
[SGN-E247118] | SGN-U562851 | Tomato 200607 | Build 2 | 25 ESTs assembled | |
Follow SGN-U# link for detailed information and annotations |
Chromatogram |
SGN-ID: SGN-T61529 [Download] [View] | Facility Assigned ID: TMGGY45TH |
Submitter: Koni | Sequencing Facility: TIGR |
Quality processing |
Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
Sequence Entropy: 0.979 | Expected Error Rate: 0.0024 | Quality Trim Threshold: 14.5 |